MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.6 nTPM
HPA Brain:96.1 nTPM
GTEx:36.6 nTPM
FANTOM5:147.8 Scaled Tags Per Million
Pig:57.7 nTPM
Mouse:43.7 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.1
2586 Male, age 75, left hemisphere 137.8
2828 Female, age 72, unknown 103.6
2666 Male, age 74, left hemisphere 99.8
1827 Male, age 72, unknown 95.8
2019 Male, age 18, unknown 88.0
1870 Female, age 42, unknown 86.4
1830 Male, age 51, unknown 86.1
1833 Male, age 53, unknown 82.8
2411 Female, age 72, unknown 82.8
2219 Male, age 76, both hemispheres 77.9
Dorsal raphe nucleus
nTPM: 75.4
2750 Male, age 76, both hemispheres 84.2
1828 Male, age 53, unknown 77.7
2016 Female, age 72, unknown 75.8
2047 Male, age 72, unknown 71.6
2298 Female, age 72, unknown 67.8
Inferior colliculus
nTPM: 89.4
2849 Male, age 72, unknown 92.5
2097 Female, age 72, unknown 92.4
1848 Female, age 42, unknown 89.7
1890 Male, age 53, unknown 82.8
Median raphe nucleus
nTPM: 75.7
2220 Male, age 76, midline 75.7
Periaquaductal grey, anterior
nTPM: 93.1
2502 Female, age 75, unknown 102.7
1947 Male, age 18, unknown 90.8
1795 Male, age 51, unknown 85.9
Periaquaductal grey, dorsal
nTPM: 74.4
1831 Male, age 72, unknown 85.5
2464 Female, age 72, unknown 80.0
1840 Male, age 53, unknown 71.3
2850 Male, age 76, both hemispheres 60.7
Periaquaductal grey, lateral
nTPM: 66.5
2053 Male, age 18, unknown 77.3
2272 Male, age 74, both hemispheres 62.1
2140 Male, age 76, both hemispheres 60.2
Pretectal area
nTPM: 82.5
1816 Male, age 51, unknown 97.3
2007 Male, age 72, unknown 95.3
1817 Female, age 42, unknown 94.7
2407 Male, age 75, both hemispheres 91.0
1815 Male, age 53, unknown 88.2
2825 Male, age 18, unknown 87.6
1944 Female, age 72, unknown 87.3
2667 Female, age 75, unknown 78.9
2316 Male, age 76, right hemisphere 68.9
2224 Female, age 72, unknown 62.5
2273 Male, age 74, both hemispheres 56.0
Red nucleus
nTPM: 96.1
2584 Male, age 75, left hemisphere 121.6
2588 Male, age 74, left hemisphere 115.9
2769 Male, age 72, unknown 99.3
2227 Male, age 72, unknown 96.8
2823 Male, age 76, right hemisphere 94.3
1954 Female, age 42, unknown 94.1
1821 Female, age 72, unknown 93.6
1865 Male, age 51, unknown 92.1
2785 Male, age 18, unknown 89.5
1904 Male, age 53, unknown 85.7
2725 Female, age 75, unknown 85.4
2503 Female, age 72, unknown 85.0
Substantia nigra
nTPM: 86.9
1941 Male, age 53, unknown 113.5
2665 Male, age 74, both hemispheres 102.0
2583 Male, age 75, right hemisphere 98.1
1889 Female, age 72, unknown 90.1
2590 Female, age 75, unknown 86.3
1916 Female, age 42, unknown 85.4
1851 Male, age 51, unknown 83.7
2699 Male, age 18, unknown 79.6
2409 Female, age 72, unknown 65.8
2241 Male, age 72, unknown 64.3
Superior colliculus
nTPM: 89.9
2664 Male, age 75, both hemispheres 123.5
2668 Female, age 75, unknown 92.2
1796 Male, age 53, unknown 89.5
2087 Female, age 72, unknown 89.0
2261 Male, age 18, unknown 87.8
1839 Male, age 51, unknown 87.0
1913 Female, age 42, unknown 84.2
1895 Male, age 76, right hemisphere 83.3
1995 Male, age 72, unknown 81.6
2587 Male, age 74, left hemisphere 80.3
Ventral tegmental area
nTPM: 78.7
1942 Male, age 51, unknown 83.3
2223 Female, age 72, unknown 82.4
1915 Female, age 42, unknown 81.6
2410 Female, age 72, unknown 80.6
2021 Male, age 53, unknown 73.5
2218 Male, age 76, both hemispheres 70.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 139

Max nTPM: 73.1
Min nTPM: 17.5
Std nTPM: 8.4
Median nTPM: 35.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 62.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 61.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 57.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 57.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 56.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 55.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 54.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 51.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 48.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 47.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.8
FF:10158-103A5 76 years, female 147.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.7
Samples: 4

Max nTPM: 55.0
Min nTPM: 40.2
Sample A Female 48.7
Sample B Female 40.2
Sample C Male 55.0
Sample D Male 43.0
Midbrain
nTPM: 57.7
Samples: 4

Max nTPM: 72.4
Min nTPM: 43.6
Sample A Female 50.2
Sample B Female 43.6
Sample C Male 64.5
Sample D Male 72.4
Periaqueductal gray
nTPM: 47.1
Samples: 3

Max nTPM: 55.0
Min nTPM: 42.6
Sample B Female 42.6
Sample C Male 55.0
Sample D Male 43.7
Superior colliculi
nTPM: 54.5
Samples: 4

Max nTPM: 65.9
Min nTPM: 42.4
Sample A Female 59.3
Sample B Female 42.4
Sample C Male 50.2
Sample D Male 65.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.7
Samples: 4

Max nTPM: 45.6
Min nTPM: 40.3
Sample A Male 45.6
Sample B Male 40.3
Sample C Female 44.6
Sample D Female 44.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
72001863 Antisense, RP_050915_02_D04, Mouse strain C57BL/6J (56 days, male) 0.3

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