MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA Brain:27.7 nTPM
GTEx:8.6 nTPM
FANTOM5:54.7 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:17.4 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.7
2586 Male, age 75, left hemisphere 48.2
2666 Male, age 74, left hemisphere 30.8
2019 Male, age 18, unknown 28.0
2828 Female, age 72, unknown 27.5
1830 Male, age 51, unknown 25.4
1870 Female, age 42, unknown 25.1
1833 Male, age 53, unknown 24.4
1827 Male, age 72, unknown 23.9
2411 Female, age 72, unknown 23.2
2219 Male, age 76, both hemispheres 21.1
Dorsal raphe nucleus
nTPM: 27.1
2298 Female, age 72, unknown 29.4
2016 Female, age 72, unknown 28.1
2047 Male, age 72, unknown 27.2
1828 Male, age 53, unknown 25.8
2750 Male, age 76, both hemispheres 25.0
Inferior colliculus
nTPM: 21.9
1890 Male, age 53, unknown 24.0
2849 Male, age 72, unknown 22.1
1848 Female, age 42, unknown 21.6
2097 Female, age 72, unknown 19.8
Median raphe nucleus
nTPM: 25.3
2220 Male, age 76, midline 25.3
Periaquaductal grey, anterior
nTPM: 25.3
1795 Male, age 51, unknown 26.6
1947 Male, age 18, unknown 25.6
2502 Female, age 75, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 26.6
2850 Male, age 76, both hemispheres 32.1
1831 Male, age 72, unknown 27.6
1840 Male, age 53, unknown 24.3
2464 Female, age 72, unknown 22.4
Periaquaductal grey, lateral
nTPM: 27.4
2140 Male, age 76, both hemispheres 30.0
2272 Male, age 74, both hemispheres 28.3
2053 Male, age 18, unknown 23.9
Pretectal area
nTPM: 24.8
2407 Male, age 75, both hemispheres 34.5
2316 Male, age 76, right hemisphere 25.8
2224 Female, age 72, unknown 25.0
1815 Male, age 53, unknown 24.7
2273 Male, age 74, both hemispheres 24.6
2825 Male, age 18, unknown 24.5
1816 Male, age 51, unknown 24.4
1817 Female, age 42, unknown 24.2
2007 Male, age 72, unknown 23.8
1944 Female, age 72, unknown 21.4
2667 Female, age 75, unknown 19.9
Red nucleus
nTPM: 26.5
2584 Male, age 75, left hemisphere 38.3
2785 Male, age 18, unknown 29.0
1904 Male, age 53, unknown 27.4
1865 Male, age 51, unknown 26.9
2725 Female, age 75, unknown 26.1
2769 Male, age 72, unknown 25.7
2227 Male, age 72, unknown 25.6
2823 Male, age 76, right hemisphere 25.5
1954 Female, age 42, unknown 24.3
1821 Female, age 72, unknown 23.4
2588 Male, age 74, left hemisphere 23.4
2503 Female, age 72, unknown 22.2
Substantia nigra
nTPM: 26.1
2583 Male, age 75, right hemisphere 35.2
2590 Female, age 75, unknown 32.3
2665 Male, age 74, both hemispheres 30.6
1941 Male, age 53, unknown 26.7
2699 Male, age 18, unknown 25.4
2241 Male, age 72, unknown 24.9
1851 Male, age 51, unknown 24.5
1916 Female, age 42, unknown 21.5
1889 Female, age 72, unknown 19.8
2409 Female, age 72, unknown 19.6
Superior colliculus
nTPM: 25.5
2664 Male, age 75, both hemispheres 33.4
1995 Male, age 72, unknown 29.8
2668 Female, age 75, unknown 26.5
1913 Female, age 42, unknown 26.2
1839 Male, age 51, unknown 25.4
2261 Male, age 18, unknown 25.1
2587 Male, age 74, left hemisphere 24.4
1796 Male, age 53, unknown 23.3
2087 Female, age 72, unknown 22.9
1895 Male, age 76, right hemisphere 18.0
Ventral tegmental area
nTPM: 24.3
2021 Male, age 53, unknown 27.6
2218 Male, age 76, both hemispheres 25.5
1942 Male, age 51, unknown 25.0
2223 Female, age 72, unknown 23.1
1915 Female, age 42, unknown 22.9
2410 Female, age 72, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.6
Samples: 139

Max nTPM: 18.7
Min nTPM: 4.5
Std nTPM: 2.9
Median nTPM: 7.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 18.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 17.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 16.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 16.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 16.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 15.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 15.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 15.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 14.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 14.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 14.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.7
FF:10158-103A5 76 years, female 54.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 25.8
Min nTPM: 23.9
Sample A Female 23.9
Sample B Female 25.1
Sample C Male 25.3
Sample D Male 25.8
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 29.0
Min nTPM: 18.6
Sample A Female 29.0
Sample B Female 19.5
Sample C Male 22.6
Sample D Male 18.6
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 23.9
Min nTPM: 19.5
Sample B Female 19.5
Sample C Male 23.9
Sample D Male 20.1
Superior colliculi
nTPM: 23.6
Samples: 4

Max nTPM: 24.2
Min nTPM: 22.9
Sample A Female 24.2
Sample B Female 24.0
Sample C Male 22.9
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 19.5
Min nTPM: 16.3
Sample A Male 16.3
Sample B Male 16.4
Sample C Female 19.5
Sample D Female 17.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
76098390 Antisense, RP_060626_01_G03, Mouse strain C57BL/6J (56 days, male) 1.2

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