MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.3 nTPM
HPA Brain:104.2 nTPM
GTEx:68.3 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:75.6 nTPM
Mouse:223.9 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.6
2411 Female, age 72, unknown 102.6
2019 Male, age 18, unknown 94.8
1870 Female, age 42, unknown 89.9
1827 Male, age 72, unknown 82.8
1833 Male, age 53, unknown 82.0
1830 Male, age 51, unknown 81.4
2586 Male, age 75, left hemisphere 81.3
2666 Male, age 74, left hemisphere 79.5
2828 Female, age 72, unknown 76.3
2219 Male, age 76, both hemispheres 74.9
Dorsal raphe nucleus
nTPM: 100.1
2298 Female, age 72, unknown 122.9
2750 Male, age 76, both hemispheres 99.6
2047 Male, age 72, unknown 97.1
2016 Female, age 72, unknown 91.0
1828 Male, age 53, unknown 90.0
Inferior colliculus
nTPM: 85.3
2097 Female, age 72, unknown 104.0
1848 Female, age 42, unknown 84.9
1890 Male, age 53, unknown 79.7
2849 Male, age 72, unknown 72.4
Median raphe nucleus
nTPM: 104.2
2220 Male, age 76, midline 104.2
Periaquaductal grey, anterior
nTPM: 91.8
1947 Male, age 18, unknown 101.2
2502 Female, age 75, unknown 96.7
1795 Male, age 51, unknown 77.5
Periaquaductal grey, dorsal
nTPM: 84.9
1840 Male, age 53, unknown 97.2
2464 Female, age 72, unknown 89.7
2850 Male, age 76, both hemispheres 79.0
1831 Male, age 72, unknown 73.5
Periaquaductal grey, lateral
nTPM: 85.5
2140 Male, age 76, both hemispheres 90.6
2272 Male, age 74, both hemispheres 88.8
2053 Male, age 18, unknown 77.1
Pretectal area
nTPM: 87.9
2273 Male, age 74, both hemispheres 101.7
2224 Female, age 72, unknown 94.2
1944 Female, age 72, unknown 93.8
2007 Male, age 72, unknown 93.6
1817 Female, age 42, unknown 92.5
1816 Male, age 51, unknown 91.1
2825 Male, age 18, unknown 87.1
1815 Male, age 53, unknown 86.0
2316 Male, age 76, right hemisphere 81.1
2667 Female, age 75, unknown 75.0
2407 Male, age 75, both hemispheres 70.8
Red nucleus
nTPM: 86.5
1821 Female, age 72, unknown 107.3
1954 Female, age 42, unknown 91.1
1904 Male, age 53, unknown 90.9
1865 Male, age 51, unknown 90.7
2785 Male, age 18, unknown 89.1
2503 Female, age 72, unknown 89.0
2725 Female, age 75, unknown 86.8
2769 Male, age 72, unknown 86.1
2227 Male, age 72, unknown 84.9
2588 Male, age 74, left hemisphere 77.6
2584 Male, age 75, left hemisphere 73.3
2823 Male, age 76, right hemisphere 71.0
Substantia nigra
nTPM: 104.0
2241 Male, age 72, unknown 146.1
1916 Female, age 42, unknown 118.8
1851 Male, age 51, unknown 111.4
1941 Male, age 53, unknown 110.9
2409 Female, age 72, unknown 100.8
1889 Female, age 72, unknown 100.6
2590 Female, age 75, unknown 96.8
2699 Male, age 18, unknown 90.4
2583 Male, age 75, right hemisphere 84.6
2665 Male, age 74, both hemispheres 79.8
Superior colliculus
nTPM: 84.8
2668 Female, age 75, unknown 97.6
2587 Male, age 74, left hemisphere 92.4
1895 Male, age 76, right hemisphere 89.4
1796 Male, age 53, unknown 86.7
2087 Female, age 72, unknown 84.8
1913 Female, age 42, unknown 84.7
2261 Male, age 18, unknown 82.2
1839 Male, age 51, unknown 82.1
1995 Male, age 72, unknown 78.1
2664 Male, age 75, both hemispheres 70.5
Ventral tegmental area
nTPM: 97.1
2410 Female, age 72, unknown 107.6
1915 Female, age 42, unknown 101.7
1942 Male, age 51, unknown 101.6
2223 Female, age 72, unknown 94.5
2218 Male, age 76, both hemispheres 89.4
2021 Male, age 53, unknown 87.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.3
Samples: 139

Max nTPM: 127.8
Min nTPM: 44.1
Std nTPM: 14.4
Median nTPM: 65.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 127.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 117.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 106.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 103.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 100.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 99.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 98.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 97.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 96.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 90.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 89.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.4
FF:10158-103A5 76 years, female 105.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.5
Samples: 4

Max nTPM: 87.0
Min nTPM: 50.2
Sample A Female 87.0
Sample B Female 61.9
Sample C Male 66.9
Sample D Male 50.2
Midbrain
nTPM: 75.6
Samples: 4

Max nTPM: 87.0
Min nTPM: 65.1
Sample A Female 87.0
Sample B Female 71.8
Sample C Male 78.5
Sample D Male 65.1
Periaqueductal gray
nTPM: 62.6
Samples: 3

Max nTPM: 69.4
Min nTPM: 55.2
Sample B Female 69.4
Sample C Male 63.3
Sample D Male 55.2
Superior colliculi
nTPM: 67.1
Samples: 4

Max nTPM: 82.6
Min nTPM: 55.9
Sample A Female 82.6
Sample B Female 55.9
Sample C Male 69.2
Sample D Male 60.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 223.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 223.9
Samples: 4

Max nTPM: 228.3
Min nTPM: 220.0
Sample A Male 224.5
Sample B Male 228.3
Sample C Female 222.8
Sample D Female 220.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
1704 Antisense, RP_040604_01_G12, Mouse strain C57BL/6J (56 days, male) 1.0

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