MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.2 nTPM
HPA Brain:52.1 nTPM
GTEx:44.2 nTPM
FANTOM5:156.9 Scaled Tags Per Million
Pig:50.2 nTPM
Mouse:22.7 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.3
1830 Male, age 51, unknown 52.1
1870 Female, age 42, unknown 49.1
2219 Male, age 76, both hemispheres 48.8
1833 Male, age 53, unknown 48.7
2666 Male, age 74, left hemisphere 48.1
2586 Male, age 75, left hemisphere 47.8
1827 Male, age 72, unknown 43.3
2828 Female, age 72, unknown 43.1
2019 Male, age 18, unknown 42.4
2411 Female, age 72, unknown 39.4
Dorsal raphe nucleus
nTPM: 37.3
1828 Male, age 53, unknown 40.7
2016 Female, age 72, unknown 39.8
2750 Male, age 76, both hemispheres 39.8
2047 Male, age 72, unknown 37.2
2298 Female, age 72, unknown 29.3
Inferior colliculus
nTPM: 44.9
2849 Male, age 72, unknown 55.0
1890 Male, age 53, unknown 44.7
1848 Female, age 42, unknown 42.9
2097 Female, age 72, unknown 36.8
Median raphe nucleus
nTPM: 44.2
2220 Male, age 76, midline 44.2
Periaquaductal grey, anterior
nTPM: 39.6
2502 Female, age 75, unknown 41.4
1947 Male, age 18, unknown 39.2
1795 Male, age 51, unknown 38.1
Periaquaductal grey, dorsal
nTPM: 44.2
2850 Male, age 76, both hemispheres 50.9
1831 Male, age 72, unknown 47.4
2464 Female, age 72, unknown 39.8
1840 Male, age 53, unknown 38.9
Periaquaductal grey, lateral
nTPM: 40.6
2140 Male, age 76, both hemispheres 45.0
2053 Male, age 18, unknown 42.0
2272 Male, age 74, both hemispheres 34.9
Pretectal area
nTPM: 42.9
2407 Male, age 75, both hemispheres 55.4
1815 Male, age 53, unknown 46.0
2316 Male, age 76, right hemisphere 45.7
2825 Male, age 18, unknown 45.4
1817 Female, age 42, unknown 42.5
2007 Male, age 72, unknown 40.8
2667 Female, age 75, unknown 40.5
1944 Female, age 72, unknown 40.1
1816 Male, age 51, unknown 40.0
2224 Female, age 72, unknown 38.9
2273 Male, age 74, both hemispheres 36.6
Red nucleus
nTPM: 52.1
2725 Female, age 75, unknown 59.8
2503 Female, age 72, unknown 57.1
1865 Male, age 51, unknown 54.4
2588 Male, age 74, left hemisphere 52.7
2227 Male, age 72, unknown 52.4
1904 Male, age 53, unknown 52.2
2584 Male, age 75, left hemisphere 51.5
1954 Female, age 42, unknown 51.4
2823 Male, age 76, right hemisphere 51.2
2785 Male, age 18, unknown 48.9
2769 Male, age 72, unknown 47.1
1821 Female, age 72, unknown 46.4
Substantia nigra
nTPM: 41.8
2699 Male, age 18, unknown 56.0
2665 Male, age 74, both hemispheres 47.9
2409 Female, age 72, unknown 44.2
2583 Male, age 75, right hemisphere 42.1
1941 Male, age 53, unknown 40.8
2590 Female, age 75, unknown 40.6
1889 Female, age 72, unknown 40.1
1851 Male, age 51, unknown 38.9
1916 Female, age 42, unknown 34.8
2241 Male, age 72, unknown 33.0
Superior colliculus
nTPM: 43.8
1913 Female, age 42, unknown 56.1
1995 Male, age 72, unknown 49.5
2664 Male, age 75, both hemispheres 47.1
1839 Male, age 51, unknown 45.3
1895 Male, age 76, right hemisphere 44.6
2587 Male, age 74, left hemisphere 44.3
2087 Female, age 72, unknown 39.9
1796 Male, age 53, unknown 38.7
2668 Female, age 75, unknown 38.6
2261 Male, age 18, unknown 33.8
Ventral tegmental area
nTPM: 43.2
2223 Female, age 72, unknown 53.4
2218 Male, age 76, both hemispheres 44.7
2021 Male, age 53, unknown 43.8
1915 Female, age 42, unknown 41.0
1942 Male, age 51, unknown 40.9
2410 Female, age 72, unknown 35.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.2
Samples: 139

Max nTPM: 76.9
Min nTPM: 21.2
Std nTPM: 9.9
Median nTPM: 43.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 74.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 66.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 63.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 63.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 62.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 62.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 61.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 61.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 60.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.9
FF:10158-103A5 76 years, female 156.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.8
Samples: 4

Max nTPM: 57.3
Min nTPM: 33.9
Sample A Female 33.9
Sample B Female 46.5
Sample C Male 49.6
Sample D Male 57.3
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 49.1
Min nTPM: 42.7
Sample A Female 49.1
Sample B Female 44.4
Sample C Male 42.7
Sample D Male 47.7
Periaqueductal gray
nTPM: 50.2
Samples: 3

Max nTPM: 52.5
Min nTPM: 47.3
Sample B Female 47.3
Sample C Male 50.7
Sample D Male 52.5
Superior colliculi
nTPM: 43.6
Samples: 4

Max nTPM: 54.4
Min nTPM: 35.6
Sample A Female 39.6
Sample B Female 35.6
Sample C Male 44.9
Sample D Male 54.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.6
Sample A Male 24.0
Sample B Male 22.1
Sample C Female 23.9
Sample D Female 20.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
69816386 Antisense, RP_050505_04_H09, Mouse strain C57BL/6J (56 days, male) 9.8
70919603 Antisense, RP_050713_01_F09, Mouse strain C57BL/6J (56 days, male) 8.3

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