MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.0 nTPM
HPA Brain:34.0 nTPM
GTEx:38.0 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:71.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.7
2586 Male, age 75, left hemisphere 40.5
2019 Male, age 18, unknown 38.5
1827 Male, age 72, unknown 34.3
1870 Female, age 42, unknown 32.7
2411 Female, age 72, unknown 30.4
1833 Male, age 53, unknown 27.9
2666 Male, age 74, left hemisphere 27.1
1830 Male, age 51, unknown 26.5
2828 Female, age 72, unknown 25.7
2219 Male, age 76, both hemispheres 23.4
Dorsal raphe nucleus
nTPM: 33.4
2298 Female, age 72, unknown 40.3
2047 Male, age 72, unknown 34.4
2750 Male, age 76, both hemispheres 31.6
1828 Male, age 53, unknown 31.2
2016 Female, age 72, unknown 29.5
Inferior colliculus
nTPM: 30.9
2097 Female, age 72, unknown 32.8
1890 Male, age 53, unknown 32.7
1848 Female, age 42, unknown 32.3
2849 Male, age 72, unknown 25.9
Median raphe nucleus
nTPM: 31.7
2220 Male, age 76, midline 31.7
Periaquaductal grey, anterior
nTPM: 31.8
1947 Male, age 18, unknown 37.9
1795 Male, age 51, unknown 28.9
2502 Female, age 75, unknown 28.7
Periaquaductal grey, dorsal
nTPM: 28.6
1840 Male, age 53, unknown 30.9
2850 Male, age 76, both hemispheres 29.4
1831 Male, age 72, unknown 27.4
2464 Female, age 72, unknown 26.6
Periaquaductal grey, lateral
nTPM: 29.8
2140 Male, age 76, both hemispheres 30.7
2272 Male, age 74, both hemispheres 29.4
2053 Male, age 18, unknown 29.3
Pretectal area
nTPM: 34.0
2007 Male, age 72, unknown 43.8
1816 Male, age 51, unknown 43.7
1944 Female, age 72, unknown 40.4
1817 Female, age 42, unknown 39.5
2667 Female, age 75, unknown 35.1
2224 Female, age 72, unknown 31.9
1815 Male, age 53, unknown 30.5
2316 Male, age 76, right hemisphere 29.6
2273 Male, age 74, both hemispheres 29.0
2407 Male, age 75, both hemispheres 25.8
2825 Male, age 18, unknown 25.2
Red nucleus
nTPM: 30.3
1821 Female, age 72, unknown 38.2
2503 Female, age 72, unknown 32.1
2785 Male, age 18, unknown 32.0
2725 Female, age 75, unknown 31.6
1865 Male, age 51, unknown 31.2
2823 Male, age 76, right hemisphere 30.4
1904 Male, age 53, unknown 30.3
1954 Female, age 42, unknown 29.9
2769 Male, age 72, unknown 29.0
2227 Male, age 72, unknown 28.2
2584 Male, age 75, left hemisphere 28.2
2588 Male, age 74, left hemisphere 22.7
Substantia nigra
nTPM: 33.1
1916 Female, age 42, unknown 40.4
1889 Female, age 72, unknown 38.8
1941 Male, age 53, unknown 36.9
1851 Male, age 51, unknown 34.8
2583 Male, age 75, right hemisphere 34.1
2241 Male, age 72, unknown 32.4
2409 Female, age 72, unknown 29.6
2665 Male, age 74, both hemispheres 29.3
2590 Female, age 75, unknown 28.4
2699 Male, age 18, unknown 26.4
Superior colliculus
nTPM: 30.3
2668 Female, age 75, unknown 34.8
1895 Male, age 76, right hemisphere 33.7
1796 Male, age 53, unknown 32.3
2087 Female, age 72, unknown 31.2
2261 Male, age 18, unknown 31.2
1913 Female, age 42, unknown 29.4
1839 Male, age 51, unknown 28.0
2587 Male, age 74, left hemisphere 27.6
2664 Male, age 75, both hemispheres 27.5
1995 Male, age 72, unknown 27.1
Ventral tegmental area
nTPM: 29.7
2410 Female, age 72, unknown 33.1
1915 Female, age 42, unknown 31.5
2218 Male, age 76, both hemispheres 31.1
2223 Female, age 72, unknown 28.0
1942 Male, age 51, unknown 27.7
2021 Male, age 53, unknown 26.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.0
Samples: 139

Max nTPM: 75.6
Min nTPM: 15.8
Std nTPM: 10.0
Median nTPM: 36.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 75.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 67.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 57.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 57.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 57.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 56.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 56.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 54.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 54.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 53.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.9
FF:10158-103A5 76 years, female 48.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.4
Samples: 4

Max nTPM: 77.0
Min nTPM: 47.6
Sample A Female 77.0
Sample B Female 52.5
Sample C Male 48.3
Sample D Male 47.6
Midbrain
nTPM: 60.1
Samples: 4

Max nTPM: 67.1
Min nTPM: 52.2
Sample A Female 63.8
Sample B Female 67.1
Sample C Male 52.2
Sample D Male 57.3
Periaqueductal gray
nTPM: 49.3
Samples: 3

Max nTPM: 53.7
Min nTPM: 43.4
Sample B Female 53.7
Sample C Male 50.7
Sample D Male 43.4
Superior colliculi
nTPM: 64.1
Samples: 4

Max nTPM: 84.3
Min nTPM: 52.3
Sample A Female 84.3
Sample B Female 60.4
Sample C Male 59.2
Sample D Male 52.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 76.2
Min nTPM: 69.7
Sample A Male 69.7
Sample B Male 70.0
Sample C Female 71.2
Sample D Female 76.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70474791 Antisense, RP_050623_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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