HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:16.6 nTPM
GTEx:11.7 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:27.4 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA065235
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.6
Sample id Sample description nTPM
Hippocampus
nTPM: 13.5
1898 Male, age 80, left hemisphere 17.4
2529 Female, age 94, left hemisphere 14.7
2148 Female, age 91, left hemisphere 13.4
1911 Female, age 85, right hemisphere 13.2
2621 Female, age 67, right hemisphere 12.1
1855 Male, age 76, left hemisphere 10.5
Dentate gyrus
nTPM: 12.7
1927 Female, age 91, both hemispheres 17.2
2010 Male, age 76, both hemispheres 14.6
2528 Male, age 74, both hemispheres 13.5
2530 Female, age 94, left hemisphere 12.9
2246 Female, age 85, both hemispheres 11.8
2531 Female, age 67, both hemispheres 6.2
Entorhinal gyrus
nTPM: 11.3
2117 Female, age 91, right hemisphere 15.2
1938 Female, age 85, left hemisphere 14.5
1787 Male, age 76, left hemisphere 11.7
2764 Male, age 80, right hemisphere 11.0
2686 Male, age 75, right hemisphere 9.1
2613 Female, age 94, left hemisphere 6.5
Hippocampus, CA1
nTPM: 16.6
2749 Male, age 80, left hemisphere 24.4
2082 Female, age 91, right hemisphere 19.3
2527 Male, age 74, both hemispheres 16.6
1873 Female, age 85, both hemispheres 15.1
2045 Male, age 76, both hemispheres 7.6
Hippocampus, CA2
nTPM: 15.8
2249 Male, age 74, both hemispheres 18.4
1963 Male, age 80, left hemisphere 18.1
1892 Male, age 76, both hemispheres 16.9
1940 Female, age 85, left hemisphere 16.4
2113 Female, age 91, right hemisphere 13.1
2437 Female, age 94, left hemisphere 11.6
Hippocampus, CA3
nTPM: 13.1
2137 Male, age 80, left hemisphere 20.2
1867 Male, age 76, both hemispheres 16.1
2436 Male, age 74, both hemispheres 15.0
1891 Female, age 85, both hemispheres 11.3
2620 Female, age 94, left hemisphere 8.8
2861 Female, age 67, both hemispheres 7.4
Parahippocampal cortex
nTPM: 12.5
2250 Female, age 67, right hemisphere 15.6
1990 Female, age 91, right hemisphere 15.0
2245 Female, age 91, both hemispheres 14.9
2018 Male, age 76, both hemispheres 13.2
2692 Male, age 74, both hemispheres 12.4
2693 Female, age 94, both hemispheres 12.0
1933 Female, age 85, both hemispheres 11.7
2622 Female, age 67, right hemisphere 10.9
1850 Male, age 80, both hemispheres 9.8
2532 Female, age 72, left hemisphere 9.2
Perirhinal gyrus
nTPM: 12.2
1847 Female, age 91, left hemisphere 16.7
2521 Female, age 94, right hemisphere 12.7
1841 Female, age 85, right hemisphere 11.7
1794 Male, age 80, right hemisphere 10.5
2848 Male, age 76, right hemisphere 9.1
Subiculum
nTPM: 13.4
2619 Male, age 74, both hemispheres 16.3
1901 Male, age 80, both hemispheres 15.4
1977 Female, age 85, both hemispheres 15.2
2729 Female, age 91, right hemisphere 13.4
2438 Female, age 94, left hemisphere 10.7
2042 Male, age 76, both hemispheres 9.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.7
Samples: 197

Max nTPM: 29.6
Min nTPM: 2.3
Std nTPM: 4.6
Median nTPM: 11.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 29.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 26.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 25.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 24.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 23.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 23.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 22.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 20.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 20.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 20.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 19.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.7
FF:10153-102I9 76 years, female 19.0
FF:10169-103B7 60 years, female 10.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Subiculum
nTPM: 8.0
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.5
Sample A Female 8.3
Sample B Female 7.6
Sample C Male 7.5
Sample D Male 8.5
Dorsal hippocampus
nTPM: 6.8
Samples: 4

Max nTPM: 7.6
Min nTPM: 5.9
Sample A Female 7.1
Sample B Female 5.9
Sample C Male 7.6
Sample D Male 6.7
Entorhinal cortex
nTPM: 8.8
Samples: 4

Max nTPM: 9.3
Min nTPM: 8.5
Sample A Female 8.7
Sample B Female 9.3
Sample C Male 8.6
Sample D Male 8.5
Ventral hippocampus
nTPM: 6.6
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 6.7
Sample C Male 7.5
Sample D Male 7.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 21.0
Sample A Male 29.1
Sample B Male 29.8
Sample C Female 21.0
Sample D Female 29.8
Hippocampal formation
nTPM: 11.8
Samples: 4

Max nTPM: 15.5
Min nTPM: 8.2
Sample A Male 15.5
Sample B Male 10.5
Sample C Female 8.2
Sample D Female 12.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
80343394 Antisense, RP_070129_03_C02, Mouse strain C57BL/6J (56 days, male) 0.6
80471935 Antisense, RP_070129_03_C02, Mouse strain C57BL/6J (56 days, male) 0.5

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