MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:15.3 nTPM
GTEx:8.9 nTPM
FANTOM5:7.1 Scaled Tags Per Million
Pig:4.5 nTPM
Mouse:16.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.2
1827 Male, age 72, unknown 13.0
2828 Female, age 72, unknown 11.5
2411 Female, age 72, unknown 11.4
1870 Female, age 42, unknown 10.4
2666 Male, age 74, left hemisphere 10.2
2019 Male, age 18, unknown 10.0
2219 Male, age 76, both hemispheres 9.9
1833 Male, age 53, unknown 9.0
2586 Male, age 75, left hemisphere 8.8
1830 Male, age 51, unknown 8.2
Dorsal raphe nucleus
nTPM: 15.3
2298 Female, age 72, unknown 22.0
2047 Male, age 72, unknown 14.9
1828 Male, age 53, unknown 13.9
2016 Female, age 72, unknown 13.9
2750 Male, age 76, both hemispheres 11.9
Inferior colliculus
nTPM: 14.2
2097 Female, age 72, unknown 19.6
1848 Female, age 42, unknown 13.6
2849 Male, age 72, unknown 12.1
1890 Male, age 53, unknown 11.5
Median raphe nucleus
nTPM: 13.3
2220 Male, age 76, midline 13.3
Periaquaductal grey, anterior
nTPM: 15.2
1947 Male, age 18, unknown 17.2
1795 Male, age 51, unknown 14.3
2502 Female, age 75, unknown 14.0
Periaquaductal grey, dorsal
nTPM: 13.7
1840 Male, age 53, unknown 16.2
2850 Male, age 76, both hemispheres 14.7
2464 Female, age 72, unknown 12.1
1831 Male, age 72, unknown 11.9
Periaquaductal grey, lateral
nTPM: 14.7
2272 Male, age 74, both hemispheres 18.2
2140 Male, age 76, both hemispheres 13.7
2053 Male, age 18, unknown 12.2
Pretectal area
nTPM: 14.7
2273 Male, age 74, both hemispheres 19.8
1816 Male, age 51, unknown 18.0
2224 Female, age 72, unknown 16.2
1944 Female, age 72, unknown 15.1
1817 Female, age 42, unknown 14.9
2007 Male, age 72, unknown 14.9
2825 Male, age 18, unknown 14.3
1815 Male, age 53, unknown 13.3
2667 Female, age 75, unknown 12.6
2316 Male, age 76, right hemisphere 11.7
2407 Male, age 75, both hemispheres 10.8
Red nucleus
nTPM: 8.9
2725 Female, age 75, unknown 11.1
1821 Female, age 72, unknown 10.8
1954 Female, age 42, unknown 10.1
2785 Male, age 18, unknown 9.8
1904 Male, age 53, unknown 9.6
2503 Female, age 72, unknown 9.5
2823 Male, age 76, right hemisphere 8.5
2227 Male, age 72, unknown 8.3
2769 Male, age 72, unknown 8.1
2584 Male, age 75, left hemisphere 7.9
1865 Male, age 51, unknown 7.4
2588 Male, age 74, left hemisphere 5.9
Substantia nigra
nTPM: 12.1
1916 Female, age 42, unknown 20.3
2241 Male, age 72, unknown 15.5
1889 Female, age 72, unknown 14.7
1851 Male, age 51, unknown 13.0
1941 Male, age 53, unknown 13.0
2699 Male, age 18, unknown 10.0
2409 Female, age 72, unknown 9.4
2665 Male, age 74, both hemispheres 8.8
2583 Male, age 75, right hemisphere 8.5
2590 Female, age 75, unknown 8.2
Superior colliculus
nTPM: 13.3
2668 Female, age 75, unknown 18.3
2087 Female, age 72, unknown 15.2
2261 Male, age 18, unknown 14.8
1796 Male, age 53, unknown 14.2
2587 Male, age 74, left hemisphere 13.5
1895 Male, age 76, right hemisphere 12.3
1839 Male, age 51, unknown 11.7
2664 Male, age 75, both hemispheres 11.6
1995 Male, age 72, unknown 11.3
1913 Female, age 42, unknown 9.8
Ventral tegmental area
nTPM: 14.1
1942 Male, age 51, unknown 17.2
2218 Male, age 76, both hemispheres 15.4
1915 Female, age 42, unknown 15.1
2021 Male, age 53, unknown 14.2
2410 Female, age 72, unknown 12.6
2223 Female, age 72, unknown 10.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 31.7
Min nTPM: 1.3
Std nTPM: 3.9
Median nTPM: 8.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 31.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 17.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 15.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 14.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 13.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 13.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 13.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 13.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.1
FF:10158-103A5 76 years, female 7.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.8
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.2
Sample A Female 4.1
Sample B Female 3.2
Sample C Male 4.1
Sample D Male 3.6
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.5
Sample A Female 4.2
Sample B Female 3.5
Sample C Male 4.7
Sample D Male 5.6
Periaqueductal gray
nTPM: 3.7
Samples: 3

Max nTPM: 3.8
Min nTPM: 3.6
Sample B Female 3.7
Sample C Male 3.6
Sample D Male 3.8
Superior colliculi
nTPM: 4.2
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.3
Sample A Female 4.1
Sample B Female 3.3
Sample C Male 4.8
Sample D Male 4.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 17.0
Min nTPM: 15.6
Sample A Male 17.0
Sample B Male 15.8
Sample C Female 15.6
Sample D Female 15.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
80343394 Antisense, RP_070129_03_C02, Mouse strain C57BL/6J (56 days, male) 0.2
80471935 Antisense, RP_070129_03_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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