MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:148.6 nTPM
HPA Brain:253.6 nTPM
GTEx:148.6 nTPM
FANTOM5:298.6 Scaled Tags Per Million
Pig:70.0 nTPM
Mouse:36.6 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 253.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 172.9
1830 Male, age 51, unknown 232.3
2019 Male, age 18, unknown 227.6
2411 Female, age 72, unknown 216.2
1870 Female, age 42, unknown 204.0
1833 Male, age 53, unknown 203.7
2828 Female, age 72, unknown 154.1
2666 Male, age 74, left hemisphere 141.5
2586 Male, age 75, left hemisphere 134.9
2219 Male, age 76, both hemispheres 108.2
1827 Male, age 72, unknown 106.5
Dorsal raphe nucleus
nTPM: 134.9
2750 Male, age 76, both hemispheres 259.1
1828 Male, age 53, unknown 132.8
2016 Female, age 72, unknown 114.8
2047 Male, age 72, unknown 101.8
2298 Female, age 72, unknown 65.9
Inferior colliculus
nTPM: 112.0
1890 Male, age 53, unknown 128.7
1848 Female, age 42, unknown 126.3
2849 Male, age 72, unknown 97.5
2097 Female, age 72, unknown 95.7
Median raphe nucleus
nTPM: 143.6
2220 Male, age 76, midline 143.6
Periaquaductal grey, anterior
nTPM: 94.2
2502 Female, age 75, unknown 119.2
1947 Male, age 18, unknown 94.6
1795 Male, age 51, unknown 68.8
Periaquaductal grey, dorsal
nTPM: 77.3
2464 Female, age 72, unknown 117.2
1831 Male, age 72, unknown 78.8
2850 Male, age 76, both hemispheres 60.7
1840 Male, age 53, unknown 52.5
Periaquaductal grey, lateral
nTPM: 80.2
2053 Male, age 18, unknown 96.1
2272 Male, age 74, both hemispheres 81.1
2140 Male, age 76, both hemispheres 63.5
Pretectal area
nTPM: 95.7
1815 Male, age 53, unknown 138.8
1817 Female, age 42, unknown 123.7
2316 Male, age 76, right hemisphere 117.9
2007 Male, age 72, unknown 115.4
2407 Male, age 75, both hemispheres 108.4
2825 Male, age 18, unknown 99.8
2273 Male, age 74, both hemispheres 78.1
2667 Female, age 75, unknown 74.7
1944 Female, age 72, unknown 68.2
2224 Female, age 72, unknown 68.2
1816 Male, age 51, unknown 59.7
Red nucleus
nTPM: 253.6
1865 Male, age 51, unknown 330.4
1821 Female, age 72, unknown 303.9
1904 Male, age 53, unknown 294.5
2823 Male, age 76, right hemisphere 291.1
2769 Male, age 72, unknown 281.5
2227 Male, age 72, unknown 277.6
2503 Female, age 72, unknown 251.9
1954 Female, age 42, unknown 246.4
2785 Male, age 18, unknown 234.7
2588 Male, age 74, left hemisphere 225.3
2584 Male, age 75, left hemisphere 153.9
2725 Female, age 75, unknown 151.4
Substantia nigra
nTPM: 136.6
2590 Female, age 75, unknown 161.7
2409 Female, age 72, unknown 160.1
1851 Male, age 51, unknown 155.6
1889 Female, age 72, unknown 151.4
2583 Male, age 75, right hemisphere 150.5
2699 Male, age 18, unknown 126.3
2241 Male, age 72, unknown 124.0
2665 Male, age 74, both hemispheres 123.9
1941 Male, age 53, unknown 109.2
1916 Female, age 42, unknown 103.7
Superior colliculus
nTPM: 125.6
1913 Female, age 42, unknown 169.3
1995 Male, age 72, unknown 162.6
2668 Female, age 75, unknown 156.5
2587 Male, age 74, left hemisphere 147.9
1839 Male, age 51, unknown 143.2
1895 Male, age 76, right hemisphere 129.6
2664 Male, age 75, both hemispheres 103.1
1796 Male, age 53, unknown 93.1
2087 Female, age 72, unknown 77.7
2261 Male, age 18, unknown 73.1
Ventral tegmental area
nTPM: 171.4
2223 Female, age 72, unknown 321.7
2410 Female, age 72, unknown 186.4
2218 Male, age 76, both hemispheres 150.0
2021 Male, age 53, unknown 128.8
1942 Male, age 51, unknown 128.3
1915 Female, age 42, unknown 113.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 148.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 148.6
Samples: 139

Max nTPM: 336.1
Min nTPM: 18.6
Std nTPM: 72.6
Median nTPM: 137.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 336.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 332.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 329.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 323.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 314.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 311.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 299.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 294.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 287.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 275.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 270.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 298.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 298.6
FF:10158-103A5 76 years, female 298.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.2
Samples: 4

Max nTPM: 67.0
Min nTPM: 43.5
Sample A Female 67.0
Sample B Female 43.5
Sample C Male 47.4
Sample D Male 54.9
Midbrain
nTPM: 58.6
Samples: 4

Max nTPM: 114.7
Min nTPM: 39.8
Sample A Female 114.7
Sample B Female 39.9
Sample C Male 39.8
Sample D Male 39.9
Periaqueductal gray
nTPM: 38.7
Samples: 3

Max nTPM: 41.2
Min nTPM: 34.9
Sample B Female 41.2
Sample C Male 40.0
Sample D Male 34.9
Superior colliculi
nTPM: 70.1
Samples: 4

Max nTPM: 112.7
Min nTPM: 41.7
Sample A Female 82.2
Sample B Female 112.7
Sample C Male 41.7
Sample D Male 43.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 39.1
Min nTPM: 34.3
Sample A Male 39.1
Sample B Male 36.8
Sample C Female 34.3
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68744432 Antisense, RP_050203_02_H07, Mouse strain C57BL/6J (56 days, male) 3.6

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