HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:16.3 nTPM
HPA Brain:42.9 nTPM
GTEx:16.3 nTPM
FANTOM5:55.7 Scaled Tags Per Million
Pig:78.1 nTPM
Mouse:15.6 nTPM
Allen mouse:4.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003335
Glial cells Medium
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.9
Sample id Sample description nTPM
Hippocampus
nTPM: 36.6
1911 Female, age 85, right hemisphere 41.9
1898 Male, age 80, left hemisphere 41.2
2621 Female, age 67, right hemisphere 36.5
2529 Female, age 94, left hemisphere 34.1
2148 Female, age 91, left hemisphere 33.9
1855 Male, age 76, left hemisphere 31.7
Dentate gyrus
nTPM: 34.7
1927 Female, age 91, both hemispheres 41.4
2531 Female, age 67, both hemispheres 37.0
2010 Male, age 76, both hemispheres 36.4
2528 Male, age 74, both hemispheres 33.6
2246 Female, age 85, both hemispheres 33.2
2530 Female, age 94, left hemisphere 26.8
Entorhinal gyrus
nTPM: 28.1
1938 Female, age 85, left hemisphere 32.6
2686 Male, age 75, right hemisphere 29.2
2117 Female, age 91, right hemisphere 28.7
2764 Male, age 80, right hemisphere 28.1
2613 Female, age 94, left hemisphere 25.0
1787 Male, age 76, left hemisphere 24.8
Hippocampus, CA1
nTPM: 42.9
2749 Male, age 80, left hemisphere 64.7
1873 Female, age 85, both hemispheres 45.3
2527 Male, age 74, both hemispheres 42.3
2045 Male, age 76, both hemispheres 33.4
2082 Female, age 91, right hemisphere 28.9
Hippocampus, CA2
nTPM: 32.3
2249 Male, age 74, both hemispheres 42.6
1963 Male, age 80, left hemisphere 36.7
1892 Male, age 76, both hemispheres 33.6
2113 Female, age 91, right hemisphere 28.2
1940 Female, age 85, left hemisphere 27.1
2437 Female, age 94, left hemisphere 25.5
Hippocampus, CA3
nTPM: 40.8
2137 Male, age 80, left hemisphere 58.9
2436 Male, age 74, both hemispheres 57.7
1891 Female, age 85, both hemispheres 33.6
1867 Male, age 76, both hemispheres 33.4
2861 Female, age 67, both hemispheres 31.8
2620 Female, age 94, left hemisphere 29.4
Parahippocampal cortex
nTPM: 30.6
2245 Female, age 91, both hemispheres 36.7
1933 Female, age 85, both hemispheres 34.9
1850 Male, age 80, both hemispheres 33.6
2250 Female, age 67, right hemisphere 33.4
2693 Female, age 94, both hemispheres 33.0
2622 Female, age 67, right hemisphere 29.3
1990 Female, age 91, right hemisphere 27.7
2532 Female, age 72, left hemisphere 26.8
2018 Male, age 76, both hemispheres 25.5
2692 Male, age 74, both hemispheres 25.5
Perirhinal gyrus
nTPM: 32.6
1841 Female, age 85, right hemisphere 36.1
1847 Female, age 91, left hemisphere 33.9
1794 Male, age 80, right hemisphere 33.3
2848 Male, age 76, right hemisphere 30.2
2521 Female, age 94, right hemisphere 29.4
Subiculum
nTPM: 30.2
1901 Male, age 80, both hemispheres 38.1
1977 Female, age 85, both hemispheres 33.1
2729 Female, age 91, right hemisphere 31.5
2042 Male, age 76, both hemispheres 28.5
2438 Female, age 94, left hemisphere 25.5
2619 Male, age 74, both hemispheres 24.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.3
Samples: 197

Max nTPM: 28.8
Min nTPM: 8.1
Std nTPM: 4.0
Median nTPM: 15.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 28.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 27.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 27.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 26.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 25.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 25.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 25.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 25.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 25.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 24.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 24.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.7
FF:10169-103B7 60 years, female 62.3
FF:10153-102I9 76 years, female 49.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 78.1
Pig sample Sample description nTPM
Subiculum
nTPM: 66.0
Samples: 4

Max nTPM: 79.2
Min nTPM: 57.0
Sample A Female 79.2
Sample B Female 62.6
Sample C Male 65.1
Sample D Male 57.0
Dorsal hippocampus
nTPM: 78.1
Samples: 4

Max nTPM: 92.7
Min nTPM: 65.9
Sample A Female 92.7
Sample B Female 87.5
Sample C Male 66.4
Sample D Male 65.9
Entorhinal cortex
nTPM: 62.9
Samples: 4

Max nTPM: 68.1
Min nTPM: 56.9
Sample A Female 63.4
Sample B Female 68.1
Sample C Male 63.0
Sample D Male 56.9
Ventral hippocampus
nTPM: 72.1
Samples: 4

Max nTPM: 84.9
Min nTPM: 64.9
Sample A Female 84.9
Sample B Female 64.9
Sample C Male 65.3
Sample D Male 73.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 12.8
Sample A Male 12.8
Sample B Male 15.0
Sample C Female 16.7
Sample D Female 17.9
Hippocampal formation
nTPM: 13.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.4
Sample A Male 15.5
Sample B Male 14.4
Sample C Female 10.4
Sample D Female 12.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
69816888 Antisense, RP_050510_02_B02, Mouse strain C57BL/6J (56 days, male) 4.0

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