MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.9 nTPM
HPA Brain:41.5 nTPM
GTEx:19.9 nTPM
FANTOM5:37.1 Scaled Tags Per Million
Pig:67.8 nTPM
Mouse:12.4 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.1
1827 Male, age 72, unknown 32.3
2219 Male, age 76, both hemispheres 28.8
1870 Female, age 42, unknown 28.2
2828 Female, age 72, unknown 27.7
2411 Female, age 72, unknown 27.3
1833 Male, age 53, unknown 26.6
1830 Male, age 51, unknown 24.2
2019 Male, age 18, unknown 23.4
2586 Male, age 75, left hemisphere 22.1
2666 Male, age 74, left hemisphere 20.9
Dorsal raphe nucleus
nTPM: 39.3
2298 Female, age 72, unknown 48.0
2047 Male, age 72, unknown 43.5
2016 Female, age 72, unknown 39.5
1828 Male, age 53, unknown 34.3
2750 Male, age 76, both hemispheres 31.4
Inferior colliculus
nTPM: 32.3
2097 Female, age 72, unknown 36.2
2849 Male, age 72, unknown 32.1
1890 Male, age 53, unknown 31.0
1848 Female, age 42, unknown 30.1
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Periaquaductal grey, anterior
nTPM: 33.6
1795 Male, age 51, unknown 34.6
1947 Male, age 18, unknown 34.5
2502 Female, age 75, unknown 31.7
Periaquaductal grey, dorsal
nTPM: 41.5
2850 Male, age 76, both hemispheres 52.1
1840 Male, age 53, unknown 48.9
1831 Male, age 72, unknown 33.8
2464 Female, age 72, unknown 31.0
Periaquaductal grey, lateral
nTPM: 39.9
2140 Male, age 76, both hemispheres 44.3
2272 Male, age 74, both hemispheres 43.5
2053 Male, age 18, unknown 31.9
Pretectal area
nTPM: 32.6
2273 Male, age 74, both hemispheres 52.6
2224 Female, age 72, unknown 39.9
2667 Female, age 75, unknown 36.1
2825 Male, age 18, unknown 33.0
2316 Male, age 76, right hemisphere 30.8
2407 Male, age 75, both hemispheres 30.4
1944 Female, age 72, unknown 29.9
1816 Male, age 51, unknown 29.4
1815 Male, age 53, unknown 25.7
1817 Female, age 42, unknown 25.5
2007 Male, age 72, unknown 25.1
Red nucleus
nTPM: 20.8
2725 Female, age 75, unknown 26.0
1821 Female, age 72, unknown 23.6
2823 Male, age 76, right hemisphere 22.6
2503 Female, age 72, unknown 21.8
1954 Female, age 42, unknown 20.6
2785 Male, age 18, unknown 20.6
2584 Male, age 75, left hemisphere 20.1
2227 Male, age 72, unknown 19.9
2769 Male, age 72, unknown 19.4
1865 Male, age 51, unknown 19.2
1904 Male, age 53, unknown 19.1
2588 Male, age 74, left hemisphere 17.4
Substantia nigra
nTPM: 38.7
1916 Female, age 42, unknown 56.1
2241 Male, age 72, unknown 50.0
2699 Male, age 18, unknown 46.6
1851 Male, age 51, unknown 43.8
1941 Male, age 53, unknown 40.4
2590 Female, age 75, unknown 33.0
2409 Female, age 72, unknown 32.1
1889 Female, age 72, unknown 30.2
2665 Male, age 74, both hemispheres 29.1
2583 Male, age 75, right hemisphere 25.9
Superior colliculus
nTPM: 27.8
1796 Male, age 53, unknown 32.7
2587 Male, age 74, left hemisphere 31.3
2664 Male, age 75, both hemispheres 29.8
2087 Female, age 72, unknown 28.8
1839 Male, age 51, unknown 28.7
2261 Male, age 18, unknown 28.7
1895 Male, age 76, right hemisphere 26.1
1995 Male, age 72, unknown 25.2
2668 Female, age 75, unknown 23.5
1913 Female, age 42, unknown 23.1
Ventral tegmental area
nTPM: 38.4
1915 Female, age 42, unknown 47.8
2218 Male, age 76, both hemispheres 42.0
2021 Male, age 53, unknown 38.4
1942 Male, age 51, unknown 38.1
2410 Female, age 72, unknown 32.3
2223 Female, age 72, unknown 31.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.9
Samples: 139

Max nTPM: 49.6
Min nTPM: 8.8
Std nTPM: 5.4
Median nTPM: 18.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 35.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 33.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 31.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 29.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 27.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 27.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 26.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.1
FF:10158-103A5 76 years, female 37.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.8
Samples: 4

Max nTPM: 101.6
Min nTPM: 23.9
Sample A Female 84.2
Sample B Female 61.6
Sample C Male 101.6
Sample D Male 23.9
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 55.9
Min nTPM: 39.4
Sample A Female 39.4
Sample B Female 55.9
Sample C Male 49.6
Sample D Male 45.3
Periaqueductal gray
nTPM: 49.9
Samples: 3

Max nTPM: 59.8
Min nTPM: 44.8
Sample B Female 45.0
Sample C Male 59.8
Sample D Male 44.8
Superior colliculi
nTPM: 36.7
Samples: 4

Max nTPM: 41.3
Min nTPM: 33.2
Sample A Female 41.3
Sample B Female 37.4
Sample C Male 34.9
Sample D Male 33.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.7
Sample A Male 11.7
Sample B Male 12.9
Sample C Female 12.4
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69816888 Antisense, RP_050510_02_B02, Mouse strain C57BL/6J (56 days, male) 2.2

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