MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.2 nTPM
HPA Brain:177.3 nTPM
GTEx:77.2 nTPM
FANTOM5:89.8 Scaled Tags Per Million
Pig:43.9 nTPM
Mouse:69.4 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 177.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 167.3
2586 Male, age 75, left hemisphere 203.4
2019 Male, age 18, unknown 200.0
2411 Female, age 72, unknown 184.9
1827 Male, age 72, unknown 184.4
2666 Male, age 74, left hemisphere 176.8
2828 Female, age 72, unknown 149.1
2219 Male, age 76, both hemispheres 147.0
1833 Male, age 53, unknown 145.7
1830 Male, age 51, unknown 142.6
1870 Female, age 42, unknown 138.8
Dorsal raphe nucleus
nTPM: 137.4
2298 Female, age 72, unknown 151.5
1828 Male, age 53, unknown 142.9
2047 Male, age 72, unknown 142.8
2750 Male, age 76, both hemispheres 136.7
2016 Female, age 72, unknown 113.2
Inferior colliculus
nTPM: 149.0
1848 Female, age 42, unknown 164.1
2849 Male, age 72, unknown 156.2
2097 Female, age 72, unknown 142.5
1890 Male, age 53, unknown 133.1
Median raphe nucleus
nTPM: 127.0
2220 Male, age 76, midline 127.0
Periaquaductal grey, anterior
nTPM: 168.2
1947 Male, age 18, unknown 175.9
1795 Male, age 51, unknown 167.7
2502 Female, age 75, unknown 161.1
Periaquaductal grey, dorsal
nTPM: 128.0
1840 Male, age 53, unknown 152.1
2464 Female, age 72, unknown 134.2
1831 Male, age 72, unknown 123.3
2850 Male, age 76, both hemispheres 102.3
Periaquaductal grey, lateral
nTPM: 123.3
2053 Male, age 18, unknown 133.8
2272 Male, age 74, both hemispheres 121.3
2140 Male, age 76, both hemispheres 114.7
Pretectal area
nTPM: 177.3
2007 Male, age 72, unknown 249.0
1816 Male, age 51, unknown 234.0
1944 Female, age 72, unknown 233.0
1817 Female, age 42, unknown 231.6
1815 Male, age 53, unknown 183.5
2667 Female, age 75, unknown 163.3
2407 Male, age 75, both hemispheres 152.0
2224 Female, age 72, unknown 141.3
2825 Male, age 18, unknown 133.6
2273 Male, age 74, both hemispheres 119.1
2316 Male, age 76, right hemisphere 109.3
Red nucleus
nTPM: 155.2
2588 Male, age 74, left hemisphere 187.2
2785 Male, age 18, unknown 185.0
2584 Male, age 75, left hemisphere 184.8
1821 Female, age 72, unknown 172.9
2503 Female, age 72, unknown 150.9
2725 Female, age 75, unknown 147.4
1954 Female, age 42, unknown 146.3
1865 Male, age 51, unknown 144.2
2227 Male, age 72, unknown 142.4
2769 Male, age 72, unknown 141.1
1904 Male, age 53, unknown 132.6
2823 Male, age 76, right hemisphere 127.5
Substantia nigra
nTPM: 168.5
1941 Male, age 53, unknown 211.9
1889 Female, age 72, unknown 206.0
2583 Male, age 75, right hemisphere 180.8
1916 Female, age 42, unknown 171.8
2665 Male, age 74, both hemispheres 170.8
2590 Female, age 75, unknown 163.5
1851 Male, age 51, unknown 160.9
2409 Female, age 72, unknown 154.5
2241 Male, age 72, unknown 150.0
2699 Male, age 18, unknown 114.8
Superior colliculus
nTPM: 160.6
2087 Female, age 72, unknown 194.9
2668 Female, age 75, unknown 183.8
2261 Male, age 18, unknown 177.8
2664 Male, age 75, both hemispheres 172.3
1895 Male, age 76, right hemisphere 166.9
1796 Male, age 53, unknown 165.4
1839 Male, age 51, unknown 154.0
2587 Male, age 74, left hemisphere 144.5
1913 Female, age 42, unknown 127.5
1995 Male, age 72, unknown 119.3
Ventral tegmental area
nTPM: 145.2
2410 Female, age 72, unknown 188.7
1915 Female, age 42, unknown 151.7
2218 Male, age 76, both hemispheres 148.6
1942 Male, age 51, unknown 138.5
2223 Female, age 72, unknown 125.7
2021 Male, age 53, unknown 117.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.2
Samples: 139

Max nTPM: 251.3
Min nTPM: 43.1
Std nTPM: 25.7
Median nTPM: 74.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 251.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 198.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 147.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 130.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 124.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 118.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 118.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 114.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 112.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 102.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 101.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.8
FF:10158-103A5 76 years, female 89.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.2
Samples: 4

Max nTPM: 47.1
Min nTPM: 21.9
Sample A Female 47.1
Sample B Female 30.3
Sample C Male 37.6
Sample D Male 21.9
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 76.1
Min nTPM: 27.0
Sample A Female 27.0
Sample B Female 28.6
Sample C Male 76.1
Sample D Male 37.9
Periaqueductal gray
nTPM: 30.5
Samples: 3

Max nTPM: 35.9
Min nTPM: 25.1
Sample B Female 30.4
Sample C Male 35.9
Sample D Male 25.1
Superior colliculi
nTPM: 43.9
Samples: 4

Max nTPM: 65.2
Min nTPM: 28.0
Sample A Female 40.9
Sample B Female 28.0
Sample C Male 65.2
Sample D Male 41.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.4
Samples: 4

Max nTPM: 71.7
Min nTPM: 65.1
Sample A Male 65.1
Sample B Male 69.5
Sample C Female 71.7
Sample D Female 71.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
68637898 Antisense, RP_050126_01_H02, Mouse strain C57BL/6J (56 days, male) 4.3

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