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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
93.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 93.8
Samples: 152
Max nTPM: 183.2
Min nTPM: 34.5
Std nTPM: 27.7
Median nTPM: 90.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
183.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
167.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
158.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
154.4
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
154.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
149.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
144.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
144.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
142.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
141.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
141.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
141.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
138.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
134.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
132.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
131.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
128.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
127.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
126.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
124.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
124.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
123.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
123.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
123.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
122.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
122.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
121.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
121.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
119.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
119.4
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
118.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
117.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
116.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
115.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
114.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
113.6
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
111.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
111.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
111.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
110.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
110.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
109.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
105.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
105.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
103.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
103.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
102.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
102.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
102.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
102.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
102.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
102.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
102.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
101.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
99.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
99.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
99.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
98.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
97.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
97.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
95.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
95.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
94.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
93.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
93.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
93.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
93.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
92.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
92.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
92.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
92.4
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
92.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
92.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
91.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
91.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
90.3
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
89.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
89.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
88.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
88.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
88.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
87.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
87.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
87.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
86.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
86.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
86.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
86.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
85.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
85.0
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
84.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
84.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
84.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
84.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
83.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
83.6
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
83.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
83.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
83.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
83.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
82.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
81.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
81.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
81.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
80.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
80.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
79.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
78.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
78.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
78.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
78.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
76.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
76.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
76.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
74.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
73.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
72.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
72.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
72.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
71.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
71.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
70.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
70.4
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
70.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
68.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
68.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
68.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
68.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
67.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
65.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
65.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
65.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
62.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
62.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
61.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
60.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
60.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
59.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
58.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
58.2
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
55.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
55.3
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
53.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
53.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
51.3
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
49.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
49.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
48.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
47.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
41.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
36.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
34.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
89.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 89.2
Samples: 4
Max nTPM: 109.0
Min nTPM: 71.2
Sample A
Male
109.0
Sample B
Male
86.1
Sample C
Female
71.2
Sample D
Female
90.6
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
