MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.2 nTPM
HPA Brain:206.9 nTPM
GTEx:66.2 nTPM
FANTOM5:76.2 Scaled Tags Per Million
Pig:85.4 nTPM
Mouse:99.9 nTPM
Allen mouse:13.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 206.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 156.2
1827 Male, age 72, unknown 193.5
2666 Male, age 74, left hemisphere 179.2
2411 Female, age 72, unknown 178.6
1870 Female, age 42, unknown 170.8
1833 Male, age 53, unknown 160.6
2586 Male, age 75, left hemisphere 158.5
2219 Male, age 76, both hemispheres 146.7
2828 Female, age 72, unknown 145.3
1830 Male, age 51, unknown 134.5
2019 Male, age 18, unknown 94.3
Dorsal raphe nucleus
nTPM: 171.2
2298 Female, age 72, unknown 219.8
2047 Male, age 72, unknown 180.2
1828 Male, age 53, unknown 156.6
2750 Male, age 76, both hemispheres 155.9
2016 Female, age 72, unknown 143.5
Inferior colliculus
nTPM: 186.4
2849 Male, age 72, unknown 202.2
2097 Female, age 72, unknown 201.1
1848 Female, age 42, unknown 191.0
1890 Male, age 53, unknown 151.4
Median raphe nucleus
nTPM: 189.6
2220 Male, age 76, midline 189.6
Periaquaductal grey, anterior
nTPM: 206.9
1947 Male, age 18, unknown 233.1
1795 Male, age 51, unknown 196.7
2502 Female, age 75, unknown 191.0
Periaquaductal grey, dorsal
nTPM: 182.1
1840 Male, age 53, unknown 226.4
2850 Male, age 76, both hemispheres 173.8
1831 Male, age 72, unknown 164.8
2464 Female, age 72, unknown 163.3
Periaquaductal grey, lateral
nTPM: 178.2
2053 Male, age 18, unknown 193.3
2140 Male, age 76, both hemispheres 176.2
2272 Male, age 74, both hemispheres 165.0
Pretectal area
nTPM: 171.4
2224 Female, age 72, unknown 221.3
2825 Male, age 18, unknown 217.6
1816 Male, age 51, unknown 191.3
2667 Female, age 75, unknown 174.6
1944 Female, age 72, unknown 164.1
2273 Male, age 74, both hemispheres 164.0
2316 Male, age 76, right hemisphere 160.6
2007 Male, age 72, unknown 153.4
1815 Male, age 53, unknown 149.1
1817 Female, age 42, unknown 147.1
2407 Male, age 75, both hemispheres 142.5
Red nucleus
nTPM: 127.0
1821 Female, age 72, unknown 150.6
2584 Male, age 75, left hemisphere 142.1
2725 Female, age 75, unknown 137.6
2769 Male, age 72, unknown 131.3
1954 Female, age 42, unknown 129.9
2227 Male, age 72, unknown 129.5
2503 Female, age 72, unknown 127.5
2588 Male, age 74, left hemisphere 125.8
1904 Male, age 53, unknown 122.6
1865 Male, age 51, unknown 112.5
2823 Male, age 76, right hemisphere 112.1
2785 Male, age 18, unknown 102.1
Substantia nigra
nTPM: 153.7
1916 Female, age 42, unknown 191.1
2241 Male, age 72, unknown 176.2
1851 Male, age 51, unknown 164.0
1889 Female, age 72, unknown 153.6
2699 Male, age 18, unknown 151.7
2590 Female, age 75, unknown 146.8
2665 Male, age 74, both hemispheres 145.1
1941 Male, age 53, unknown 141.6
2583 Male, age 75, right hemisphere 135.1
2409 Female, age 72, unknown 131.5
Superior colliculus
nTPM: 158.2
2261 Male, age 18, unknown 198.8
1796 Male, age 53, unknown 198.2
1839 Male, age 51, unknown 177.9
1895 Male, age 76, right hemisphere 174.4
2087 Female, age 72, unknown 159.6
2664 Male, age 75, both hemispheres 157.4
2668 Female, age 75, unknown 155.3
2587 Male, age 74, left hemisphere 143.6
1913 Female, age 42, unknown 112.9
1995 Male, age 72, unknown 104.1
Ventral tegmental area
nTPM: 173.5
1915 Female, age 42, unknown 187.3
2218 Male, age 76, both hemispheres 181.5
2021 Male, age 53, unknown 172.5
2410 Female, age 72, unknown 170.7
1942 Male, age 51, unknown 167.5
2223 Female, age 72, unknown 161.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.2
GTEx sample id Sample description nTPM
50.661.877.032.1115.4020406080100120140
Brain - Substantia nigra
Average nTPM: 66.2
Samples: 139

Max nTPM: 147.5
Min nTPM: 32.1
Std nTPM: 20.8
Median nTPM: 61.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 147.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 128.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 123.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 115.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 113.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 112.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 110.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 110.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 104.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 104.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 103.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.2
FF:10158-103A5 76 years, female 76.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 85.4
Pig sample Sample description nTPM
50.269.787.542.290.50102030405060708090
 		Substantia nigra
nTPM: 68.0
Samples: 4

Max nTPM: 90.5
Min nTPM: 42.2
Sample A Female 90.5
Sample B Female 52.9
Sample C Male 86.5
Sample D Male 42.2
57.678.098.250.0105.50102030405060708090100
 		Midbrain
nTPM: 77.9
Samples: 4

Max nTPM: 105.5
Min nTPM: 50.0
Sample A Female 50.0
Sample B Female 60.1
Sample C Male 105.5
Sample D Male 95.8
60.564.072.357.180.601020304050607080
 		Periaqueductal gray
nTPM: 67.2
Samples: 3

Max nTPM: 80.6
Min nTPM: 57.1
Sample B Female 64.0
Sample C Male 80.6
Sample D Male 57.1
81.690.093.866.495.40102030405060708090
 		Superior colliculi
nTPM: 85.5
Samples: 4

Max nTPM: 95.4
Min nTPM: 66.4
Sample A Female 95.4
Sample B Female 66.4
Sample C Male 93.3
Sample D Male 86.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.9
Mouse sample Sample description nTPM
98.3100.8102.495.1102.70102030405060708090100
 		Midbrain
nTPM: 99.9
Samples: 4

Max nTPM: 102.7
Min nTPM: 95.1
Sample A Male 95.1
Sample B Male 102.3
Sample C Female 102.7
Sample D Female 99.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.0
77620309 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 14.3
355883 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 11.6
293903 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 10.6
77869130 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 8.4

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