HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:44.8 nTPM
GTEx:21.6 nTPM
FANTOM5:90.2 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:48.7 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA045954Antibody HPA076632Antibody CAB003686
Glial cells Not detectedMediumNot detected
Neuronal cells MediumHighMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Hippocampus
nTPM: 40.8
1855 Male, age 76, left hemisphere 46.3
1898 Male, age 80, left hemisphere 46.3
2529 Female, age 94, left hemisphere 42.8
2148 Female, age 91, left hemisphere 37.7
2621 Female, age 67, right hemisphere 36.4
1911 Female, age 85, right hemisphere 35.4
Dentate gyrus
nTPM: 38.5
2010 Male, age 76, both hemispheres 54.5
2528 Male, age 74, both hemispheres 38.2
2246 Female, age 85, both hemispheres 37.5
1927 Female, age 91, both hemispheres 36.3
2530 Female, age 94, left hemisphere 34.1
2531 Female, age 67, both hemispheres 30.5
Entorhinal gyrus
nTPM: 29.1
1938 Female, age 85, left hemisphere 36.2
2764 Male, age 80, right hemisphere 30.6
1787 Male, age 76, left hemisphere 29.2
2613 Female, age 94, left hemisphere 27.6
2686 Male, age 75, right hemisphere 26.1
2117 Female, age 91, right hemisphere 24.9
Hippocampus, CA1
nTPM: 44.8
2749 Male, age 80, left hemisphere 50.6
1873 Female, age 85, both hemispheres 50.3
2045 Male, age 76, both hemispheres 42.2
2082 Female, age 91, right hemisphere 41.0
2527 Male, age 74, both hemispheres 39.9
Hippocampus, CA2
nTPM: 40.3
2249 Male, age 74, both hemispheres 56.5
1963 Male, age 80, left hemisphere 46.2
1940 Female, age 85, left hemisphere 42.0
2113 Female, age 91, right hemisphere 37.1
1892 Male, age 76, both hemispheres 34.2
2437 Female, age 94, left hemisphere 25.9
Hippocampus, CA3
nTPM: 38.5
2436 Male, age 74, both hemispheres 58.6
2137 Male, age 80, left hemisphere 49.3
2620 Female, age 94, left hemisphere 33.5
1891 Female, age 85, both hemispheres 33.0
2861 Female, age 67, both hemispheres 29.2
1867 Male, age 76, both hemispheres 27.4
Parahippocampal cortex
nTPM: 31.2
1850 Male, age 80, both hemispheres 40.0
1990 Female, age 91, right hemisphere 32.9
1933 Female, age 85, both hemispheres 32.4
2692 Male, age 74, both hemispheres 31.5
2245 Female, age 91, both hemispheres 30.6
2532 Female, age 72, left hemisphere 30.4
2018 Male, age 76, both hemispheres 30.0
2250 Female, age 67, right hemisphere 29.9
2622 Female, age 67, right hemisphere 27.9
2693 Female, age 94, both hemispheres 26.3
Perirhinal gyrus
nTPM: 34.6
1841 Female, age 85, right hemisphere 37.0
1847 Female, age 91, left hemisphere 36.9
2521 Female, age 94, right hemisphere 33.6
2848 Male, age 76, right hemisphere 33.1
1794 Male, age 80, right hemisphere 32.4
Subiculum
nTPM: 33.5
2729 Female, age 91, right hemisphere 36.3
2619 Male, age 74, both hemispheres 34.9
2042 Male, age 76, both hemispheres 34.4
1901 Male, age 80, both hemispheres 34.0
2438 Female, age 94, left hemisphere 30.9
1977 Female, age 85, both hemispheres 30.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.6
Samples: 197

Max nTPM: 61.4
Min nTPM: 8.7
Std nTPM: 6.4
Median nTPM: 20.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 61.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 40.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 36.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 36.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 36.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 35.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 35.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 34.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 34.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 34.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 32.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 90.2
FF:10169-103B7 60 years, female 97.6
FF:10153-102I9 76 years, female 82.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Subiculum
nTPM: 25.4
Samples: 4

Max nTPM: 30.2
Min nTPM: 22.1
Sample A Female 30.2
Sample B Female 23.0
Sample C Male 22.1
Sample D Male 26.2
Dorsal hippocampus
nTPM: 27.0
Samples: 4

Max nTPM: 32.3
Min nTPM: 24.1
Sample A Female 32.3
Sample B Female 25.5
Sample C Male 26.2
Sample D Male 24.1
Entorhinal cortex
nTPM: 23.9
Samples: 4

Max nTPM: 25.2
Min nTPM: 22.7
Sample A Female 25.2
Sample B Female 24.3
Sample C Male 23.5
Sample D Male 22.7
Ventral hippocampus
nTPM: 26.6
Samples: 4

Max nTPM: 31.4
Min nTPM: 23.1
Sample A Female 31.4
Sample B Female 23.1
Sample C Male 26.3
Sample D Male 25.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 18.7
Sample A Male 22.3
Sample B Male 21.7
Sample C Female 24.0
Sample D Female 18.7
Hippocampal formation
nTPM: 48.7
Samples: 4

Max nTPM: 80.4
Min nTPM: 21.9
Sample A Male 21.9
Sample B Male 37.1
Sample C Female 55.3
Sample D Female 80.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
68341693 Antisense, RP_041207_02_A06, Mouse strain C57BL/6J (56 days, male) 2.1
77910729 Antisense, RP_070208_04_F09, Mouse strain C57BL/6J (56 days, male) 1.2
77371789 Antisense, RP_070116_01_C04, Mouse strain C57BL/6J (56 days, male) 0.3

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