MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.3 nTPM
HPA Brain:68.8 nTPM
GTEx:30.3 nTPM
FANTOM5:102.7 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:36.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.8
2586 Male, age 75, left hemisphere 51.9
2828 Female, age 72, unknown 49.6
1827 Male, age 72, unknown 44.5
2219 Male, age 76, both hemispheres 41.7
1870 Female, age 42, unknown 37.7
2666 Male, age 74, left hemisphere 37.1
1833 Male, age 53, unknown 36.4
1830 Male, age 51, unknown 34.0
2411 Female, age 72, unknown 29.2
2019 Male, age 18, unknown 26.1
Dorsal raphe nucleus
nTPM: 40.1
2016 Female, age 72, unknown 54.9
2298 Female, age 72, unknown 45.8
1828 Male, age 53, unknown 38.4
2047 Male, age 72, unknown 33.2
2750 Male, age 76, both hemispheres 28.1
Inferior colliculus
nTPM: 36.2
2849 Male, age 72, unknown 39.4
1848 Female, age 42, unknown 39.2
1890 Male, age 53, unknown 35.2
2097 Female, age 72, unknown 30.9
Median raphe nucleus
nTPM: 27.7
2220 Male, age 76, midline 27.7
Periaquaductal grey, anterior
nTPM: 50.1
2502 Female, age 75, unknown 53.1
1795 Male, age 51, unknown 49.0
1947 Male, age 18, unknown 48.3
Periaquaductal grey, dorsal
nTPM: 48.7
1840 Male, age 53, unknown 55.8
2850 Male, age 76, both hemispheres 54.8
1831 Male, age 72, unknown 47.8
2464 Female, age 72, unknown 36.5
Periaquaductal grey, lateral
nTPM: 55.6
2140 Male, age 76, both hemispheres 57.2
2272 Male, age 74, both hemispheres 56.1
2053 Male, age 18, unknown 53.5
Pretectal area
nTPM: 45.2
2273 Male, age 74, both hemispheres 68.1
2224 Female, age 72, unknown 53.8
2667 Female, age 75, unknown 52.6
2407 Male, age 75, both hemispheres 50.2
1944 Female, age 72, unknown 46.4
1815 Male, age 53, unknown 42.8
1816 Male, age 51, unknown 42.7
2825 Male, age 18, unknown 42.7
2007 Male, age 72, unknown 33.1
2316 Male, age 76, right hemisphere 33.1
1817 Female, age 42, unknown 31.7
Red nucleus
nTPM: 29.8
2725 Female, age 75, unknown 40.0
2503 Female, age 72, unknown 35.0
1821 Female, age 72, unknown 32.9
2584 Male, age 75, left hemisphere 30.2
2588 Male, age 74, left hemisphere 30.1
2769 Male, age 72, unknown 29.3
1865 Male, age 51, unknown 29.2
2227 Male, age 72, unknown 29.0
1954 Female, age 42, unknown 27.7
1904 Male, age 53, unknown 26.7
2823 Male, age 76, right hemisphere 24.1
2785 Male, age 18, unknown 23.0
Substantia nigra
nTPM: 68.8
2699 Male, age 18, unknown 112.9
1916 Female, age 42, unknown 111.1
1851 Male, age 51, unknown 87.8
2241 Male, age 72, unknown 84.9
1941 Male, age 53, unknown 61.4
2409 Female, age 72, unknown 51.2
2590 Female, age 75, unknown 50.9
2583 Male, age 75, right hemisphere 47.4
2665 Male, age 74, both hemispheres 42.0
1889 Female, age 72, unknown 38.2
Superior colliculus
nTPM: 43.7
2664 Male, age 75, both hemispheres 64.3
1796 Male, age 53, unknown 50.9
2261 Male, age 18, unknown 49.8
2587 Male, age 74, left hemisphere 46.1
1839 Male, age 51, unknown 41.7
2087 Female, age 72, unknown 40.7
1995 Male, age 72, unknown 40.4
1913 Female, age 42, unknown 40.0
1895 Male, age 76, right hemisphere 32.1
2668 Female, age 75, unknown 31.4
Ventral tegmental area
nTPM: 51.1
1915 Female, age 42, unknown 66.5
2218 Male, age 76, both hemispheres 56.4
2410 Female, age 72, unknown 54.7
2021 Male, age 53, unknown 47.0
1942 Male, age 51, unknown 44.7
2223 Female, age 72, unknown 37.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.3
Samples: 139

Max nTPM: 59.2
Min nTPM: 9.8
Std nTPM: 10.2
Median nTPM: 29.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 57.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 56.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 54.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 54.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 53.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 52.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 49.0
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 48.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 46.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 45.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.7
FF:10158-103A5 76 years, female 102.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 29.1
Min nTPM: 23.0
Sample A Female 29.1
Sample B Female 23.7
Sample C Male 25.2
Sample D Male 23.0
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 30.1
Min nTPM: 26.6
Sample A Female 30.1
Sample B Female 27.4
Sample C Male 26.6
Sample D Male 28.8
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 30.1
Min nTPM: 24.6
Sample B Female 24.6
Sample C Male 28.9
Sample D Male 30.1
Superior colliculi
nTPM: 35.6
Samples: 4

Max nTPM: 61.4
Min nTPM: 23.4
Sample A Female 29.2
Sample B Female 61.4
Sample C Male 23.4
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 40.2
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 35.1
Sample C Female 36.3
Sample D Female 40.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68341693 Antisense, RP_041207_02_A06, Mouse strain C57BL/6J (56 days, male) 1.7
77371789 Antisense, RP_070116_01_C04, Mouse strain C57BL/6J (56 days, male) 0.5
77910729 Antisense, RP_070208_04_F09, Mouse strain C57BL/6J (56 days, male) 0.5

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