MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:151.6 nTPM
HPA Brain:158.3 nTPM
GTEx:151.6 nTPM
FANTOM5:256.6 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:16.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 158.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.3
1870 Female, age 42, unknown 154.6
2828 Female, age 72, unknown 150.9
2411 Female, age 72, unknown 148.8
2019 Male, age 18, unknown 140.2
1830 Male, age 51, unknown 139.3
1833 Male, age 53, unknown 124.1
2219 Male, age 76, both hemispheres 105.8
2586 Male, age 75, left hemisphere 101.9
2666 Male, age 74, left hemisphere 97.4
1827 Male, age 72, unknown 90.0
Dorsal raphe nucleus
nTPM: 125.4
2750 Male, age 76, both hemispheres 197.4
2016 Female, age 72, unknown 136.2
1828 Male, age 53, unknown 106.2
2047 Male, age 72, unknown 96.9
2298 Female, age 72, unknown 90.5
Inferior colliculus
nTPM: 117.5
1890 Male, age 53, unknown 154.4
2097 Female, age 72, unknown 116.2
1848 Female, age 42, unknown 103.3
2849 Male, age 72, unknown 96.0
Median raphe nucleus
nTPM: 76.9
2220 Male, age 76, midline 76.9
Periaquaductal grey, anterior
nTPM: 101.2
2502 Female, age 75, unknown 115.0
1947 Male, age 18, unknown 108.6
1795 Male, age 51, unknown 80.2
Periaquaductal grey, dorsal
nTPM: 89.0
2464 Female, age 72, unknown 117.9
2850 Male, age 76, both hemispheres 88.4
1831 Male, age 72, unknown 74.8
1840 Male, age 53, unknown 74.7
Periaquaductal grey, lateral
nTPM: 102.6
2272 Male, age 74, both hemispheres 107.5
2140 Male, age 76, both hemispheres 107.0
2053 Male, age 18, unknown 93.2
Pretectal area
nTPM: 107.9
2316 Male, age 76, right hemisphere 166.1
2667 Female, age 75, unknown 140.3
1817 Female, age 42, unknown 119.9
2007 Male, age 72, unknown 115.6
1815 Male, age 53, unknown 112.7
2273 Male, age 74, both hemispheres 112.6
2224 Female, age 72, unknown 98.4
1944 Female, age 72, unknown 89.1
2825 Male, age 18, unknown 88.8
2407 Male, age 75, both hemispheres 72.7
1816 Male, age 51, unknown 71.1
Red nucleus
nTPM: 158.3
2769 Male, age 72, unknown 190.2
2227 Male, age 72, unknown 189.6
1865 Male, age 51, unknown 186.5
2785 Male, age 18, unknown 183.2
1904 Male, age 53, unknown 180.9
2503 Female, age 72, unknown 177.4
1954 Female, age 42, unknown 169.4
1821 Female, age 72, unknown 163.3
2823 Male, age 76, right hemisphere 154.7
2588 Male, age 74, left hemisphere 125.0
2725 Female, age 75, unknown 97.7
2584 Male, age 75, left hemisphere 81.3
Substantia nigra
nTPM: 102.4
1889 Female, age 72, unknown 124.6
1851 Male, age 51, unknown 121.5
2583 Male, age 75, right hemisphere 114.5
2699 Male, age 18, unknown 111.7
2241 Male, age 72, unknown 97.5
1941 Male, age 53, unknown 96.3
1916 Female, age 42, unknown 95.5
2665 Male, age 74, both hemispheres 93.2
2409 Female, age 72, unknown 91.8
2590 Female, age 75, unknown 77.9
Superior colliculus
nTPM: 121.8
1913 Female, age 42, unknown 185.4
1995 Male, age 72, unknown 168.8
2668 Female, age 75, unknown 153.3
1895 Male, age 76, right hemisphere 147.4
1839 Male, age 51, unknown 117.4
2587 Male, age 74, left hemisphere 114.4
1796 Male, age 53, unknown 94.9
2261 Male, age 18, unknown 92.0
2087 Female, age 72, unknown 82.0
2664 Male, age 75, both hemispheres 62.6
Ventral tegmental area
nTPM: 111.1
2410 Female, age 72, unknown 134.7
1942 Male, age 51, unknown 120.7
1915 Female, age 42, unknown 109.4
2021 Male, age 53, unknown 109.3
2218 Male, age 76, both hemispheres 100.3
2223 Female, age 72, unknown 92.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 151.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 151.6
Samples: 139

Max nTPM: 504.5
Min nTPM: 51.2
Std nTPM: 69.8
Median nTPM: 134.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 504.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 428.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 417.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 297.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 270.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 266.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 263.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 262.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 260.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 260.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 251.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 256.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 256.6
FF:10158-103A5 76 years, female 256.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.7
Samples: 4

Max nTPM: 43.4
Min nTPM: 29.3
Sample A Female 43.4
Sample B Female 29.8
Sample C Male 29.3
Sample D Male 40.2
Midbrain
nTPM: 49.0
Samples: 4

Max nTPM: 88.4
Min nTPM: 30.0
Sample A Female 88.4
Sample B Female 40.3
Sample C Male 37.1
Sample D Male 30.0
Periaqueductal gray
nTPM: 39.1
Samples: 3

Max nTPM: 43.9
Min nTPM: 35.5
Sample B Female 43.9
Sample C Male 38.0
Sample D Male 35.5
Superior colliculi
nTPM: 34.7
Samples: 4

Max nTPM: 41.9
Min nTPM: 25.2
Sample A Female 41.9
Sample B Female 25.2
Sample C Male 37.4
Sample D Male 34.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.1
Sample A Male 14.1
Sample B Male 14.1
Sample C Female 17.5
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69114097 Antisense, RP_050317_01_B07, Mouse strain C57BL/6J (56 days, male) 0.1

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