MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.1 nTPM
HPA Brain:26.6 nTPM
GTEx:36.1 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:3.9 nTPM
Mouse:92.2 nTPM
Allen mouse:11.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.9
2019 Male, age 18, unknown 26.0
2411 Female, age 72, unknown 21.2
2586 Male, age 75, left hemisphere 20.7
1827 Male, age 72, unknown 20.4
2828 Female, age 72, unknown 20.1
2219 Male, age 76, both hemispheres 18.8
1833 Male, age 53, unknown 18.6
1870 Female, age 42, unknown 16.4
1830 Male, age 51, unknown 14.9
2666 Male, age 74, left hemisphere 11.4
Dorsal raphe nucleus
nTPM: 22.7
2298 Female, age 72, unknown 32.9
2016 Female, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 19.8
1828 Male, age 53, unknown 19.5
2047 Male, age 72, unknown 16.3
Inferior colliculus
nTPM: 16.0
2097 Female, age 72, unknown 20.8
1890 Male, age 53, unknown 18.6
2849 Male, age 72, unknown 12.5
1848 Female, age 42, unknown 12.3
Median raphe nucleus
nTPM: 16.6
2220 Male, age 76, midline 16.6
Periaquaductal grey, anterior
nTPM: 22.8
1795 Male, age 51, unknown 27.6
2502 Female, age 75, unknown 21.0
1947 Male, age 18, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 16.9
2850 Male, age 76, both hemispheres 18.7
1840 Male, age 53, unknown 17.2
1831 Male, age 72, unknown 16.5
2464 Female, age 72, unknown 15.1
Periaquaductal grey, lateral
nTPM: 26.6
2272 Male, age 74, both hemispheres 48.0
2140 Male, age 76, both hemispheres 16.2
2053 Male, age 18, unknown 15.6
Pretectal area
nTPM: 22.2
2273 Male, age 74, both hemispheres 43.0
2007 Male, age 72, unknown 26.8
1816 Male, age 51, unknown 25.5
1944 Female, age 72, unknown 24.4
2667 Female, age 75, unknown 23.9
1815 Male, age 53, unknown 21.0
1817 Female, age 42, unknown 19.3
2224 Female, age 72, unknown 18.8
2316 Male, age 76, right hemisphere 15.6
2825 Male, age 18, unknown 13.9
2407 Male, age 75, both hemispheres 11.8
Red nucleus
nTPM: 23.5
2785 Male, age 18, unknown 31.2
2227 Male, age 72, unknown 27.9
2503 Female, age 72, unknown 27.0
2823 Male, age 76, right hemisphere 24.3
1904 Male, age 53, unknown 24.0
2769 Male, age 72, unknown 23.3
2588 Male, age 74, left hemisphere 23.2
1821 Female, age 72, unknown 21.7
2725 Female, age 75, unknown 21.3
2584 Male, age 75, left hemisphere 19.6
1954 Female, age 42, unknown 19.5
1865 Male, age 51, unknown 18.5
Substantia nigra
nTPM: 19.2
1916 Female, age 42, unknown 25.5
1851 Male, age 51, unknown 22.9
2583 Male, age 75, right hemisphere 21.6
1941 Male, age 53, unknown 20.9
1889 Female, age 72, unknown 20.1
2699 Male, age 18, unknown 19.7
2665 Male, age 74, both hemispheres 19.5
2590 Female, age 75, unknown 16.4
2241 Male, age 72, unknown 12.9
2409 Female, age 72, unknown 12.1
Superior colliculus
nTPM: 18.3
1995 Male, age 72, unknown 26.0
2261 Male, age 18, unknown 22.7
2668 Female, age 75, unknown 21.1
2087 Female, age 72, unknown 20.9
1796 Male, age 53, unknown 19.2
1913 Female, age 42, unknown 16.1
2587 Male, age 74, left hemisphere 15.8
1839 Male, age 51, unknown 14.4
1895 Male, age 76, right hemisphere 13.8
2664 Male, age 75, both hemispheres 13.2
Ventral tegmental area
nTPM: 18.4
2218 Male, age 76, both hemispheres 22.8
1915 Female, age 42, unknown 20.4
1942 Male, age 51, unknown 19.1
2410 Female, age 72, unknown 18.5
2223 Female, age 72, unknown 16.5
2021 Male, age 53, unknown 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.1
Samples: 139

Max nTPM: 84.0
Min nTPM: 9.1
Std nTPM: 13.0
Median nTPM: 34.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 84.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 78.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 66.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 64.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 63.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 61.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 59.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 58.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 57.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 56.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.1
FF:10158-103A5 76 years, female 19.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.4
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.7
Sample A Female 4.2
Sample B Female 2.7
Sample C Male 3.9
Sample D Male 2.9
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 3.4
Sample C Male 4.1
Sample D Male 4.3
Periaqueductal gray
nTPM: 3.6
Samples: 3

Max nTPM: 4.3
Min nTPM: 3.1
Sample B Female 3.3
Sample C Male 4.3
Sample D Male 3.1
Superior colliculi
nTPM: 3.9
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.3
Sample A Female 4.0
Sample B Female 3.3
Sample C Male 4.4
Sample D Male 3.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.2
Samples: 4

Max nTPM: 106.8
Min nTPM: 79.1
Sample A Male 106.8
Sample B Male 89.0
Sample C Female 79.1
Sample D Female 93.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.4
75259494 Antisense, RP_051214_02_B10, Mouse strain C57BL/6J (56 days, male) 11.4
75259440 Antisense, RP_051214_02_B10, Mouse strain C57BL/6J (56 days, male) 10.4
75692765 Antisense, RP_051214_02_B10, Mouse strain C57BL/6J (56 days, male) 10.0

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