MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.7 nTPM
HPA Brain:112.7 nTPM
GTEx:77.7 nTPM
FANTOM5:89.4 Scaled Tags Per Million
Pig:75.4 nTPM
Mouse:56.3 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 112.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.9
2586 Male, age 75, left hemisphere 160.7
2828 Female, age 72, unknown 127.1
2666 Male, age 74, left hemisphere 119.0
1827 Male, age 72, unknown 107.9
2219 Male, age 76, both hemispheres 106.8
1870 Female, age 42, unknown 88.5
1833 Male, age 53, unknown 86.8
2019 Male, age 18, unknown 86.3
2411 Female, age 72, unknown 83.1
1830 Male, age 51, unknown 82.4
Dorsal raphe nucleus
nTPM: 89.4
2047 Male, age 72, unknown 97.3
2298 Female, age 72, unknown 90.2
1828 Male, age 53, unknown 89.6
2016 Female, age 72, unknown 87.1
2750 Male, age 76, both hemispheres 82.6
Inferior colliculus
nTPM: 87.3
1890 Male, age 53, unknown 95.1
2097 Female, age 72, unknown 87.7
1848 Female, age 42, unknown 85.2
2849 Male, age 72, unknown 81.3
Median raphe nucleus
nTPM: 98.7
2220 Male, age 76, midline 98.7
Periaquaductal grey, anterior
nTPM: 112.7
1795 Male, age 51, unknown 115.6
2502 Female, age 75, unknown 111.8
1947 Male, age 18, unknown 110.7
Periaquaductal grey, dorsal
nTPM: 83.4
1831 Male, age 72, unknown 91.2
2850 Male, age 76, both hemispheres 86.7
1840 Male, age 53, unknown 78.8
2464 Female, age 72, unknown 77.0
Periaquaductal grey, lateral
nTPM: 87.6
2053 Male, age 18, unknown 91.4
2272 Male, age 74, both hemispheres 88.8
2140 Male, age 76, both hemispheres 82.4
Pretectal area
nTPM: 96.2
1816 Male, age 51, unknown 117.7
2007 Male, age 72, unknown 108.4
1815 Male, age 53, unknown 108.0
1817 Female, age 42, unknown 104.9
2407 Male, age 75, both hemispheres 99.8
1944 Female, age 72, unknown 97.0
2825 Male, age 18, unknown 94.0
2667 Female, age 75, unknown 90.9
2273 Male, age 74, both hemispheres 81.3
2316 Male, age 76, right hemisphere 79.9
2224 Female, age 72, unknown 76.0
Red nucleus
nTPM: 97.8
2584 Male, age 75, left hemisphere 134.6
2588 Male, age 74, left hemisphere 106.0
2725 Female, age 75, unknown 99.0
2785 Male, age 18, unknown 97.8
1904 Male, age 53, unknown 97.3
2503 Female, age 72, unknown 96.0
1865 Male, age 51, unknown 94.1
2227 Male, age 72, unknown 92.9
2769 Male, age 72, unknown 92.3
1954 Female, age 42, unknown 89.7
2823 Male, age 76, right hemisphere 87.9
1821 Female, age 72, unknown 85.6
Substantia nigra
nTPM: 106.1
2665 Male, age 74, both hemispheres 128.9
1916 Female, age 42, unknown 121.1
1851 Male, age 51, unknown 114.6
2583 Male, age 75, right hemisphere 113.7
2699 Male, age 18, unknown 107.6
1941 Male, age 53, unknown 102.4
2590 Female, age 75, unknown 102.2
1889 Female, age 72, unknown 97.2
2241 Male, age 72, unknown 92.9
2409 Female, age 72, unknown 80.8
Superior colliculus
nTPM: 101.6
2664 Male, age 75, both hemispheres 140.2
2261 Male, age 18, unknown 114.1
1796 Male, age 53, unknown 112.4
2668 Female, age 75, unknown 107.2
2087 Female, age 72, unknown 100.8
1913 Female, age 42, unknown 97.8
1995 Male, age 72, unknown 93.6
1839 Male, age 51, unknown 87.3
2587 Male, age 74, left hemisphere 86.4
1895 Male, age 76, right hemisphere 76.6
Ventral tegmental area
nTPM: 99.6
1942 Male, age 51, unknown 106.1
1915 Female, age 42, unknown 105.2
2410 Female, age 72, unknown 103.2
2218 Male, age 76, both hemispheres 101.1
2021 Male, age 53, unknown 91.4
2223 Female, age 72, unknown 90.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.7
Samples: 139

Max nTPM: 119.3
Min nTPM: 43.1
Std nTPM: 15.4
Median nTPM: 76.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 119.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 110.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 110.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 107.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 106.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 105.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 105.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 103.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 102.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 101.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.4
FF:10158-103A5 76 years, female 89.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.6
Samples: 4

Max nTPM: 73.2
Min nTPM: 58.7
Sample A Female 72.4
Sample B Female 58.7
Sample C Male 73.2
Sample D Male 69.9
Midbrain
nTPM: 75.4
Samples: 4

Max nTPM: 83.6
Min nTPM: 61.0
Sample A Female 79.5
Sample B Female 61.0
Sample C Male 83.6
Sample D Male 77.5
Periaqueductal gray
nTPM: 57.6
Samples: 3

Max nTPM: 63.7
Min nTPM: 53.7
Sample B Female 53.7
Sample C Male 63.7
Sample D Male 55.5
Superior colliculi
nTPM: 74.9
Samples: 4

Max nTPM: 82.3
Min nTPM: 69.3
Sample A Female 77.0
Sample B Female 69.3
Sample C Male 71.0
Sample D Male 82.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.4
Samples: 4

Max nTPM: 60.7
Min nTPM: 54.0
Sample A Male 60.7
Sample B Male 54.0
Sample C Female 54.9
Sample D Female 55.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
71488768 Antisense, RP_050825_02_D12, Mouse strain C57BL/6J (56 days, male) 2.6

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