BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:3.8 nTPM
HPA Brain:111.8 nTPM
GTEx:3.8 nTPM
FANTOM5:83.8 Scaled Tags Per Million
Pig:36.2 nTPM
Mouse:7.7 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA071767
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 111.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 100.9
2289 Male, age 61, right hemisphere 135.8
2481 Female, age 94, left hemisphere 121.8
2290 Female, age 72, unknown 109.2
2288 Male, age 75, left hemisphere 99.5
1781 Male, age 74, unknown 89.8
2846 Female, age 79, unknown 89.3
1857 Female, age 85, left hemisphere 82.1
1854 Male, age 80, left hemisphere 80.0
Globus pallidus, externus
nTPM: 102.2
2646 Male, age 61, right hemisphere 132.1
2567 Female, age 72, unknown 108.0
1996 Male, age 80, right hemisphere 101.9
2772 Female, age 79, unknown 90.1
2395 Male, age 75, both hemispheres 78.7
Globus pallidus, internus
nTPM: 98.0
1818 Male, age 74, unknown 125.5
2566 Female, age 72, unknown 101.1
2037 Male, age 80, right hemisphere 99.9
2778 Female, age 91, both hemispheres 99.3
2111 Female, age 85, right hemisphere 92.7
2483 Female, age 94, right hemisphere 92.3
2287 Male, age 75, right hemisphere 75.0
Nucleus accumbens
nTPM: 111.8
2824 Male, age 61, right hemisphere 145.8
2698 Female, age 72, unknown 134.2
1856 Female, age 91, right hemisphere 129.4
1783 Male, age 74, unknown 117.7
2732 Male, age 80, right hemisphere 106.3
2286 Male, age 75, left hemisphere 91.5
2391 Female, age 94, left hemisphere 87.6
1806 Female, age 85, left hemisphere 81.8
Nucleus basalis of Meynert
nTPM: 105.2
2569 Male, age 61, both hemispheres 144.5
2821 Male, age 75, both hemispheres 104.1
2393 Male, age 80, right hemisphere 89.3
2484 Female, age 94, left hemisphere 82.7
Nucleus of the diagonal band
nTPM: 82.6
1979 Male, age 74, unknown 103.1
1812 Female, age 91, both hemispheres 83.4
2195 Female, age 85, both hemispheres 83.1
2775 Male, age 80, right hemisphere 74.2
2029 Male, age 61, right hemisphere 69.2
Putamen
nTPM: 100.8
2482 Female, age 94, left hemisphere 115.8
1937 Female, age 91, right hemisphere 108.8
2647 Male, age 75, left hemisphere 105.3
2489 Female, age 72, unknown 105.0
1838 Male, age 80, right hemisphere 96.9
1829 Male, age 74, unknown 96.3
2466 Female, age 79, unknown 77.8
Septal nuclei
nTPM: 91.9
2059 Female, age 85, both hemispheres 130.8
2199 Male, age 80, right hemisphere 115.4
2629 Female, age 94, right hemisphere 94.7
2009 Female, age 91, both hemispheres 88.3
2394 Male, age 61, left hemisphere 80.3
1960 Male, age 74, unknown 68.1
2031 Female, age 72, unknown 65.4
Stria terminalis, bed nucleus
nTPM: 81.8
2201 Male, age 74, unknown 95.5
2486 Female, age 94, both hemispheres 82.6
1974 Female, age 91, both hemispheres 67.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.8
Samples: 246

Max nTPM: 8.3
Min nTPM: 0.9
Std nTPM: 1.3
Median nTPM: 3.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 8.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 8.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 7.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 7.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 7.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 7.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 7.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 6.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 6.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 6.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.7
Samples: 246

Max nTPM: 8.0
Min nTPM: 1.2
Std nTPM: 1.1
Median nTPM: 3.6
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 8.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 7.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 7.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 7.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 6.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 6.7
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 6.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 6.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 6.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 6.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 6.2
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Brain - Putamen (basal ganglia)
Average nTPM: 3.3
Samples: 205

Max nTPM: 6.3
Min nTPM: 1.1
Std nTPM: 1.0
Median nTPM: 3.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 6.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 6.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 6.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 5.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 5.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 5.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 5.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 5.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 5.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 5.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 5.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.6
FF:10164-103B2 76 years, female 75.6
Nucleus accumbens
Scaled Tags Per Million: 46.2
FF:10037-101F1 23-56 years, mixed 46.2
Putamen
Scaled Tags Per Million: 83.8
FF:10176-103C5 60 years, female 83.8
Globus pallidus
Scaled Tags Per Million: 65.4
FF:10175-103C4 60 years, female 76.1
FF:10161-103A8 76 years, female 54.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 36.2
Pig sample Sample description nTPM
Caudate
nTPM: 34.7
Samples: 4

Max nTPM: 41.0
Min nTPM: 32.0
Sample A Female 41.0
Sample B Female 32.9
Sample C Male 32.0
Sample D Male 32.8
Putamen
nTPM: 28.0
Samples: 4

Max nTPM: 34.1
Min nTPM: 24.2
Sample A Female 34.1
Sample B Female 27.9
Sample C Male 24.2
Sample D Male 25.6
Septum
nTPM: 36.2
Samples: 4

Max nTPM: 40.0
Min nTPM: 33.0
Sample A Female 33.1
Sample B Female 38.6
Sample C Male 33.0
Sample D Male 40.0
Ventral pallidum
nTPM: 32.5
Samples: 4

Max nTPM: 37.0
Min nTPM: 28.7
Sample A Female 37.0
Sample B Female 34.8
Sample C Male 28.7
Sample D Male 29.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.2
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.7
Sample A Male 6.8
Sample B Male 6.7
Sample C Female 7.6
Sample D Female 7.6
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.0
Sample A Male 5.4
Sample B Male 5.1
Sample C Female 5.0
Sample D Female 6.4
Ventral forebrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.7
Sample A Male 7.8
Sample B Male 8.1
Sample C Female 6.7
Sample D Female 8.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
80514159 Antisense, RP_071203_03_F06, Mouse strain C57BL/6J (56 days, male) 1.5
2697 Antisense, RP_040507_01_G10, Mouse strain C57BL/6J (56 days, male) 0.5
2698 Antisense, RP_040507_01_G10, Mouse strain C57BL/6J (56 days, male) 0.4
75043140 Antisense, RP_051212_02_G12, Mouse strain C57BL/6J (56 days, male) 0.4
73808361 Antisense, RP_051212_02_G12, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.6
80514159 Antisense, RP_071203_03_F06, Mouse strain C57BL/6J (56 days, male) 1.1
2697 Antisense, RP_040507_01_G10, Mouse strain C57BL/6J (56 days, male) 0.4
2698 Antisense, RP_040507_01_G10, Mouse strain C57BL/6J (56 days, male) 0.4
75043140 Antisense, RP_051212_02_G12, Mouse strain C57BL/6J (56 days, male) 0.3
73808361 Antisense, RP_051212_02_G12, Mouse strain C57BL/6J (56 days, male) 0.2

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