MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.0 nTPM
HPA Brain:151.7 nTPM
GTEx:3.0 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:6.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 151.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.3
2828 Female, age 72, unknown 127.1
1827 Male, age 72, unknown 120.6
2586 Male, age 75, left hemisphere 114.9
2666 Male, age 74, left hemisphere 100.9
1833 Male, age 53, unknown 97.0
1830 Male, age 51, unknown 94.9
1870 Female, age 42, unknown 89.2
2219 Male, age 76, both hemispheres 82.4
2019 Male, age 18, unknown 74.5
2411 Female, age 72, unknown 71.0
Dorsal raphe nucleus
nTPM: 112.7
2016 Female, age 72, unknown 133.4
2298 Female, age 72, unknown 124.3
2047 Male, age 72, unknown 107.3
1828 Male, age 53, unknown 100.2
2750 Male, age 76, both hemispheres 98.2
Inferior colliculus
nTPM: 108.0
2849 Male, age 72, unknown 120.8
1848 Female, age 42, unknown 116.5
1890 Male, age 53, unknown 109.1
2097 Female, age 72, unknown 85.7
Median raphe nucleus
nTPM: 96.3
2220 Male, age 76, midline 96.3
Periaquaductal grey, anterior
nTPM: 145.3
1947 Male, age 18, unknown 164.8
1795 Male, age 51, unknown 161.4
2502 Female, age 75, unknown 109.9
Periaquaductal grey, dorsal
nTPM: 130.0
2850 Male, age 76, both hemispheres 174.9
1840 Male, age 53, unknown 121.6
1831 Male, age 72, unknown 114.2
2464 Female, age 72, unknown 109.3
Periaquaductal grey, lateral
nTPM: 151.7
2140 Male, age 76, both hemispheres 171.4
2272 Male, age 74, both hemispheres 147.4
2053 Male, age 18, unknown 136.4
Pretectal area
nTPM: 111.0
2273 Male, age 74, both hemispheres 161.6
2224 Female, age 72, unknown 127.5
2667 Female, age 75, unknown 126.0
2825 Male, age 18, unknown 119.0
1816 Male, age 51, unknown 107.8
1944 Female, age 72, unknown 103.8
2316 Male, age 76, right hemisphere 103.4
2407 Male, age 75, both hemispheres 100.3
1815 Male, age 53, unknown 93.2
1817 Female, age 42, unknown 92.7
2007 Male, age 72, unknown 86.0
Red nucleus
nTPM: 95.1
2725 Female, age 75, unknown 112.3
1954 Female, age 42, unknown 109.9
1904 Male, age 53, unknown 101.9
2503 Female, age 72, unknown 101.6
2227 Male, age 72, unknown 98.3
2769 Male, age 72, unknown 98.1
2588 Male, age 74, left hemisphere 93.7
1865 Male, age 51, unknown 89.7
2823 Male, age 76, right hemisphere 86.5
2584 Male, age 75, left hemisphere 85.3
1821 Female, age 72, unknown 84.0
2785 Male, age 18, unknown 80.2
Substantia nigra
nTPM: 100.7
2699 Male, age 18, unknown 121.0
2409 Female, age 72, unknown 109.2
2665 Male, age 74, both hemispheres 108.7
2590 Female, age 75, unknown 107.7
1941 Male, age 53, unknown 105.5
1916 Female, age 42, unknown 102.5
1851 Male, age 51, unknown 95.4
2583 Male, age 75, right hemisphere 92.8
1889 Female, age 72, unknown 83.9
2241 Male, age 72, unknown 80.0
Superior colliculus
nTPM: 105.8
1995 Male, age 72, unknown 126.6
2664 Male, age 75, both hemispheres 124.3
2261 Male, age 18, unknown 115.9
1913 Female, age 42, unknown 109.5
1839 Male, age 51, unknown 106.8
1796 Male, age 53, unknown 105.9
2587 Male, age 74, left hemisphere 102.6
2668 Female, age 75, unknown 92.8
2087 Female, age 72, unknown 89.3
1895 Male, age 76, right hemisphere 84.6
Ventral tegmental area
nTPM: 94.8
2021 Male, age 53, unknown 109.7
2223 Female, age 72, unknown 93.6
2218 Male, age 76, both hemispheres 93.2
1942 Male, age 51, unknown 92.9
1915 Female, age 42, unknown 90.7
2410 Female, age 72, unknown 88.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.0
Samples: 139

Max nTPM: 7.3
Min nTPM: 1.1
Std nTPM: 1.1
Median nTPM: 2.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 7.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 6.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 6.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 5.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 5.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 5.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 5.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 4.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 4.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.6
FF:10158-103A5 76 years, female 63.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.6
Samples: 4

Max nTPM: 41.1
Min nTPM: 28.7
Sample A Female 28.7
Sample B Female 36.0
Sample C Male 32.7
Sample D Male 41.1
Midbrain
nTPM: 37.9
Samples: 4

Max nTPM: 50.6
Min nTPM: 30.2
Sample A Female 50.6
Sample B Female 33.1
Sample C Male 37.8
Sample D Male 30.2
Periaqueductal gray
nTPM: 47.1
Samples: 3

Max nTPM: 49.4
Min nTPM: 44.3
Sample B Female 47.6
Sample C Male 44.3
Sample D Male 49.4
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 32.6
Min nTPM: 21.9
Sample A Female 23.0
Sample B Female 21.9
Sample C Male 31.1
Sample D Male 32.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.6
Sample A Male 5.6
Sample B Male 6.6
Sample C Female 6.1
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
80514159 Antisense, RP_071203_03_F06, Mouse strain C57BL/6J (56 days, male) 0.5
75043140 Antisense, RP_051212_02_G12, Mouse strain C57BL/6J (56 days, male) 0.4
2697 Antisense, RP_040507_01_G10, Mouse strain C57BL/6J (56 days, male) 0.3
2698 Antisense, RP_040507_01_G10, Mouse strain C57BL/6J (56 days, male) 0.1
73808361 Antisense, RP_051212_02_G12, Mouse strain C57BL/6J (56 days, male) 0.1

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