MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA Brain:35.4 nTPM
GTEx:17.9 nTPM
FANTOM5:60.9 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:56.6 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.7
2828 Female, age 72, unknown 37.3
2019 Male, age 18, unknown 36.2
2666 Male, age 74, left hemisphere 35.4
2219 Male, age 76, both hemispheres 34.2
1870 Female, age 42, unknown 33.1
1827 Male, age 72, unknown 32.1
1830 Male, age 51, unknown 32.1
1833 Male, age 53, unknown 31.3
2411 Female, age 72, unknown 29.2
2586 Male, age 75, left hemisphere 26.2
Dorsal raphe nucleus
nTPM: 32.6
2298 Female, age 72, unknown 35.7
1828 Male, age 53, unknown 33.2
2047 Male, age 72, unknown 31.7
2016 Female, age 72, unknown 31.2
2750 Male, age 76, both hemispheres 30.9
Inferior colliculus
nTPM: 33.3
2097 Female, age 72, unknown 38.0
1890 Male, age 53, unknown 32.6
2849 Male, age 72, unknown 32.6
1848 Female, age 42, unknown 30.0
Median raphe nucleus
nTPM: 30.6
2220 Male, age 76, midline 30.6
Periaquaductal grey, anterior
nTPM: 31.0
2502 Female, age 75, unknown 31.3
1947 Male, age 18, unknown 31.2
1795 Male, age 51, unknown 30.6
Periaquaductal grey, dorsal
nTPM: 33.2
2850 Male, age 76, both hemispheres 35.1
1840 Male, age 53, unknown 34.3
2464 Female, age 72, unknown 32.9
1831 Male, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 32.6
2272 Male, age 74, both hemispheres 33.9
2140 Male, age 76, both hemispheres 32.5
2053 Male, age 18, unknown 31.3
Pretectal area
nTPM: 35.4
2273 Male, age 74, both hemispheres 39.5
1816 Male, age 51, unknown 38.5
1815 Male, age 53, unknown 36.5
1817 Female, age 42, unknown 36.0
2007 Male, age 72, unknown 36.0
2224 Female, age 72, unknown 35.3
2407 Male, age 75, both hemispheres 35.0
2667 Female, age 75, unknown 35.0
2316 Male, age 76, right hemisphere 33.8
2825 Male, age 18, unknown 32.5
1944 Female, age 72, unknown 32.0
Red nucleus
nTPM: 32.8
2785 Male, age 18, unknown 38.0
1821 Female, age 72, unknown 36.1
2823 Male, age 76, right hemisphere 35.0
2584 Male, age 75, left hemisphere 33.9
1865 Male, age 51, unknown 33.4
1904 Male, age 53, unknown 33.3
1954 Female, age 42, unknown 32.1
2503 Female, age 72, unknown 31.7
2227 Male, age 72, unknown 31.3
2769 Male, age 72, unknown 29.8
2725 Female, age 75, unknown 29.6
2588 Male, age 74, left hemisphere 28.9
Substantia nigra
nTPM: 33.5
2241 Male, age 72, unknown 44.4
1889 Female, age 72, unknown 35.8
2409 Female, age 72, unknown 34.6
2665 Male, age 74, both hemispheres 33.3
2583 Male, age 75, right hemisphere 33.2
2590 Female, age 75, unknown 32.0
1851 Male, age 51, unknown 31.5
1941 Male, age 53, unknown 31.0
2699 Male, age 18, unknown 30.3
1916 Female, age 42, unknown 28.7
Superior colliculus
nTPM: 32.4
2668 Female, age 75, unknown 37.2
2087 Female, age 72, unknown 35.2
1796 Male, age 53, unknown 32.7
1895 Male, age 76, right hemisphere 32.7
2587 Male, age 74, left hemisphere 31.7
1839 Male, age 51, unknown 31.3
1995 Male, age 72, unknown 31.1
1913 Female, age 42, unknown 30.9
2261 Male, age 18, unknown 30.9
2664 Male, age 75, both hemispheres 30.3
Ventral tegmental area
nTPM: 31.6
1915 Female, age 42, unknown 33.8
2218 Male, age 76, both hemispheres 32.4
2021 Male, age 53, unknown 31.9
1942 Male, age 51, unknown 31.8
2223 Female, age 72, unknown 31.0
2410 Female, age 72, unknown 28.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 28.1
Min nTPM: 12.8
Std nTPM: 2.9
Median nTPM: 17.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 27.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 26.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 25.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 23.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 22.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.9
FF:10158-103A5 76 years, female 60.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.3
Samples: 4

Max nTPM: 33.0
Min nTPM: 23.7
Sample A Female 33.0
Sample B Female 26.3
Sample C Male 26.2
Sample D Male 23.7
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 29.9
Min nTPM: 26.8
Sample A Female 29.9
Sample B Female 29.3
Sample C Male 27.9
Sample D Male 26.8
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 26.3
Min nTPM: 24.0
Sample B Female 26.3
Sample C Male 25.5
Sample D Male 24.0
Superior colliculi
nTPM: 27.3
Samples: 4

Max nTPM: 30.6
Min nTPM: 24.5
Sample A Female 30.6
Sample B Female 24.6
Sample C Male 29.6
Sample D Male 24.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.6
Samples: 4

Max nTPM: 61.6
Min nTPM: 51.4
Sample A Male 51.4
Sample B Male 55.9
Sample C Female 61.6
Sample D Female 57.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
2373 Antisense, RP_040420_01_A03, Mouse strain C57BL/6J (56 days, male) 6.7
2374 Antisense, RP_040420_01_A03, Mouse strain C57BL/6J (56 days, male) 6.0

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