MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.8 nTPM
HPA Brain:46.1 nTPM
GTEx:66.8 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:68.9 nTPM
Mouse:74.8 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.4
1870 Female, age 42, unknown 49.7
1833 Male, age 53, unknown 45.2
2019 Male, age 18, unknown 43.6
2219 Male, age 76, both hemispheres 42.9
1827 Male, age 72, unknown 40.8
2411 Female, age 72, unknown 40.2
1830 Male, age 51, unknown 39.8
2828 Female, age 72, unknown 35.5
2666 Male, age 74, left hemisphere 34.9
2586 Male, age 75, left hemisphere 31.2
Dorsal raphe nucleus
nTPM: 43.1
2298 Female, age 72, unknown 46.2
2750 Male, age 76, both hemispheres 46.1
1828 Male, age 53, unknown 42.6
2016 Female, age 72, unknown 40.6
2047 Male, age 72, unknown 39.9
Inferior colliculus
nTPM: 45.0
2097 Female, age 72, unknown 50.1
1848 Female, age 42, unknown 45.1
2849 Male, age 72, unknown 42.4
1890 Male, age 53, unknown 42.3
Median raphe nucleus
nTPM: 42.3
2220 Male, age 76, midline 42.3
Periaquaductal grey, anterior
nTPM: 40.8
1947 Male, age 18, unknown 47.6
2502 Female, age 75, unknown 38.2
1795 Male, age 51, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 40.5
2850 Male, age 76, both hemispheres 46.5
1840 Male, age 53, unknown 40.3
1831 Male, age 72, unknown 37.5
2464 Female, age 72, unknown 37.5
Periaquaductal grey, lateral
nTPM: 39.3
2053 Male, age 18, unknown 40.1
2272 Male, age 74, both hemispheres 39.1
2140 Male, age 76, both hemispheres 38.8
Pretectal area
nTPM: 44.4
1944 Female, age 72, unknown 52.7
2224 Female, age 72, unknown 49.6
1817 Female, age 42, unknown 49.5
1816 Male, age 51, unknown 48.6
1815 Male, age 53, unknown 46.8
2667 Female, age 75, unknown 46.5
2007 Male, age 72, unknown 46.0
2316 Male, age 76, right hemisphere 40.8
2273 Male, age 74, both hemispheres 40.0
2825 Male, age 18, unknown 37.8
2407 Male, age 75, both hemispheres 30.4
Red nucleus
nTPM: 43.4
1821 Female, age 72, unknown 55.2
1954 Female, age 42, unknown 47.8
2725 Female, age 75, unknown 47.8
1865 Male, age 51, unknown 46.4
1904 Male, age 53, unknown 46.2
2823 Male, age 76, right hemisphere 45.6
2503 Female, age 72, unknown 42.8
2227 Male, age 72, unknown 41.6
2769 Male, age 72, unknown 40.8
2785 Male, age 18, unknown 40.1
2588 Male, age 74, left hemisphere 34.8
2584 Male, age 75, left hemisphere 32.0
Substantia nigra
nTPM: 46.1
2241 Male, age 72, unknown 56.1
1889 Female, age 72, unknown 55.7
1916 Female, age 42, unknown 51.7
1851 Male, age 51, unknown 48.4
1941 Male, age 53, unknown 46.4
2699 Male, age 18, unknown 45.8
2409 Female, age 72, unknown 44.2
2665 Male, age 74, both hemispheres 40.2
2590 Female, age 75, unknown 39.7
2583 Male, age 75, right hemisphere 33.2
Superior colliculus
nTPM: 41.7
1895 Male, age 76, right hemisphere 46.4
2587 Male, age 74, left hemisphere 46.1
1913 Female, age 42, unknown 45.8
2668 Female, age 75, unknown 43.0
2087 Female, age 72, unknown 42.6
1995 Male, age 72, unknown 42.1
1839 Male, age 51, unknown 39.8
2261 Male, age 18, unknown 39.7
1796 Male, age 53, unknown 38.7
2664 Male, age 75, both hemispheres 32.7
Ventral tegmental area
nTPM: 44.7
2223 Female, age 72, unknown 49.5
2218 Male, age 76, both hemispheres 48.1
1915 Female, age 42, unknown 45.3
2410 Female, age 72, unknown 45.2
1942 Male, age 51, unknown 40.9
2021 Male, age 53, unknown 38.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.8
Samples: 139

Max nTPM: 121.9
Min nTPM: 42.5
Std nTPM: 11.3
Median nTPM: 64.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 121.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 103.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 94.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 94.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 89.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 89.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 87.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 87.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 85.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 83.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 83.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.3
FF:10158-103A5 76 years, female 115.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.5
Samples: 4

Max nTPM: 85.6
Min nTPM: 33.3
Sample A Female 85.6
Sample B Female 51.6
Sample C Male 59.4
Sample D Male 33.3
Midbrain
nTPM: 65.1
Samples: 4

Max nTPM: 72.5
Min nTPM: 57.7
Sample A Female 57.7
Sample B Female 64.6
Sample C Male 72.5
Sample D Male 65.6
Periaqueductal gray
nTPM: 48.9
Samples: 3

Max nTPM: 53.9
Min nTPM: 43.3
Sample B Female 43.3
Sample C Male 53.9
Sample D Male 49.4
Superior colliculi
nTPM: 68.9
Samples: 4

Max nTPM: 78.1
Min nTPM: 60.0
Sample A Female 75.8
Sample B Female 61.7
Sample C Male 78.1
Sample D Male 60.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 82.7
Min nTPM: 64.7
Sample A Male 78.9
Sample B Male 82.7
Sample C Female 64.7
Sample D Female 72.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
323597 Antisense, RP_040609_01_H01, Mouse strain C57BL/6J (56 days, male) 3.7
68203507 Antisense, RP_041208_01_E03, Mouse strain C57BL/6J (56 days, male) 0.3

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