BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:56.4 nTPM
HPA Brain:55.3 nTPM
GTEx:56.4 nTPM
FANTOM5:144.2 Scaled Tags Per Million
Pig:54.2 nTPM
Mouse:78.6 nTPM
Allen mouse:3.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051712
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.0
1781 Male, age 74, unknown 49.3
2481 Female, age 94, left hemisphere 49.0
2288 Male, age 75, left hemisphere 48.0
2290 Female, age 72, unknown 46.0
2846 Female, age 79, unknown 45.8
1854 Male, age 80, left hemisphere 42.2
1857 Female, age 85, left hemisphere 41.9
2289 Male, age 61, right hemisphere 38.1
Globus pallidus, externus
nTPM: 39.0
2772 Female, age 79, unknown 43.5
2395 Male, age 75, both hemispheres 40.2
1996 Male, age 80, right hemisphere 38.0
2646 Male, age 61, right hemisphere 37.2
2567 Female, age 72, unknown 36.1
Globus pallidus, internus
nTPM: 38.0
1818 Male, age 74, unknown 42.7
2483 Female, age 94, right hemisphere 42.5
2287 Male, age 75, right hemisphere 37.4
2566 Female, age 72, unknown 37.0
2037 Male, age 80, right hemisphere 36.9
2778 Female, age 91, both hemispheres 35.8
2111 Female, age 85, right hemisphere 33.8
Nucleus accumbens
nTPM: 42.5
1856 Female, age 91, right hemisphere 49.3
1783 Male, age 74, unknown 44.5
1806 Female, age 85, left hemisphere 44.5
2286 Male, age 75, left hemisphere 44.5
2698 Female, age 72, unknown 43.9
2391 Female, age 94, left hemisphere 40.5
2824 Male, age 61, right hemisphere 39.1
2732 Male, age 80, right hemisphere 33.9
Nucleus basalis of Meynert
nTPM: 41.9
2821 Male, age 75, both hemispheres 47.5
2484 Female, age 94, left hemisphere 41.3
2393 Male, age 80, right hemisphere 40.3
2569 Male, age 61, both hemispheres 38.5
Nucleus of the diagonal band
nTPM: 55.3
1812 Female, age 91, both hemispheres 58.3
2029 Male, age 61, right hemisphere 57.8
2775 Male, age 80, right hemisphere 57.5
2195 Female, age 85, both hemispheres 55.3
1979 Male, age 74, unknown 47.8
Putamen
nTPM: 45.7
2647 Male, age 75, left hemisphere 47.3
1829 Male, age 74, unknown 47.0
2482 Female, age 94, left hemisphere 46.8
2489 Female, age 72, unknown 46.5
1838 Male, age 80, right hemisphere 46.2
2466 Female, age 79, unknown 43.7
1937 Female, age 91, right hemisphere 42.1
Septal nuclei
nTPM: 48.5
1960 Male, age 74, unknown 59.2
2031 Female, age 72, unknown 54.8
2629 Female, age 94, right hemisphere 52.6
2009 Female, age 91, both hemispheres 49.6
2059 Female, age 85, both hemispheres 47.7
2199 Male, age 80, right hemisphere 39.2
2394 Male, age 61, left hemisphere 36.6
Stria terminalis, bed nucleus
nTPM: 47.5
1974 Female, age 91, both hemispheres 53.3
2486 Female, age 94, both hemispheres 46.8
2201 Male, age 74, unknown 42.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.7
Samples: 246

Max nTPM: 97.7
Min nTPM: 33.4
Std nTPM: 8.7
Median nTPM: 52.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 97.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 88.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 87.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 77.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 74.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 72.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 71.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 71.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 69.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 69.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 69.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.4
Samples: 246

Max nTPM: 87.7
Min nTPM: 32.7
Std nTPM: 8.5
Median nTPM: 54.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 87.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 81.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 80.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 75.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 75.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 75.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 73.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 72.1
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 71.7
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 71.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 71.0
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Brain - Putamen (basal ganglia)
Average nTPM: 56.4
Samples: 205

Max nTPM: 90.6
Min nTPM: 37.3
Std nTPM: 7.7
Median nTPM: 55.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 90.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 78.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 77.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 74.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 74.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 73.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 73.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 72.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 71.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 71.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 69.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.7
FF:10164-103B2 76 years, female 124.7
Nucleus accumbens
Scaled Tags Per Million: 90.3
FF:10037-101F1 23-56 years, mixed 90.3
Putamen
Scaled Tags Per Million: 106.4
FF:10176-103C5 60 years, female 106.4
Globus pallidus
Scaled Tags Per Million: 144.2
FF:10175-103C4 60 years, female 168.7
FF:10161-103A8 76 years, female 119.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 54.2
Pig sample Sample description nTPM
Caudate
nTPM: 48.7
Samples: 4

Max nTPM: 53.5
Min nTPM: 43.7
Sample A Female 45.2
Sample B Female 52.2
Sample C Male 53.5
Sample D Male 43.7
Putamen
nTPM: 54.2
Samples: 4

Max nTPM: 64.0
Min nTPM: 49.8
Sample A Female 49.8
Sample B Female 50.1
Sample C Male 64.0
Sample D Male 52.8
Septum
nTPM: 53.1
Samples: 4

Max nTPM: 56.0
Min nTPM: 51.7
Sample A Female 56.0
Sample B Female 52.1
Sample C Male 52.5
Sample D Male 51.7
Ventral pallidum
nTPM: 51.7
Samples: 4

Max nTPM: 54.1
Min nTPM: 48.7
Sample A Female 50.8
Sample B Female 53.3
Sample C Male 54.1
Sample D Male 48.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 78.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.4
Samples: 4

Max nTPM: 69.6
Min nTPM: 61.1
Sample A Male 62.1
Sample B Male 61.1
Sample C Female 69.6
Sample D Female 64.6
Septum
nTPM: 78.6
Samples: 4

Max nTPM: 82.4
Min nTPM: 75.9
Sample A Male 79.0
Sample B Male 82.4
Sample C Female 77.2
Sample D Female 75.9
Ventral forebrain
nTPM: 64.0
Samples: 4

Max nTPM: 67.6
Min nTPM: 59.0
Sample A Male 63.3
Sample B Male 67.6
Sample C Female 66.0
Sample D Female 59.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.9
275684 Antisense, RP_040617_01_B05, Mouse strain C57BL/6J (56 days, male) 3.9
Pallidum
Expression energy: 3.5
275684 Antisense, RP_040617_01_B05, Mouse strain C57BL/6J (56 days, male) 3.5

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