MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.2 nTPM
HPA Brain:50.4 nTPM
GTEx:53.2 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:57.4 nTPM
Mouse:77.1 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.8
2586 Male, age 75, left hemisphere 52.7
2666 Male, age 74, left hemisphere 52.5
1827 Male, age 72, unknown 48.7
2019 Male, age 18, unknown 48.1
2828 Female, age 72, unknown 45.4
2219 Male, age 76, both hemispheres 42.7
2411 Female, age 72, unknown 41.0
1870 Female, age 42, unknown 36.7
1833 Male, age 53, unknown 36.6
1830 Male, age 51, unknown 33.8
Dorsal raphe nucleus
nTPM: 41.4
1828 Male, age 53, unknown 44.8
2047 Male, age 72, unknown 44.6
2750 Male, age 76, both hemispheres 40.4
2298 Female, age 72, unknown 40.2
2016 Female, age 72, unknown 37.0
Inferior colliculus
nTPM: 40.5
2097 Female, age 72, unknown 44.1
1890 Male, age 53, unknown 43.6
1848 Female, age 42, unknown 38.4
2849 Male, age 72, unknown 35.8
Median raphe nucleus
nTPM: 50.4
2220 Male, age 76, midline 50.4
Periaquaductal grey, anterior
nTPM: 44.8
1795 Male, age 51, unknown 47.9
2502 Female, age 75, unknown 43.7
1947 Male, age 18, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 39.1
1831 Male, age 72, unknown 42.5
1840 Male, age 53, unknown 38.3
2464 Female, age 72, unknown 37.8
2850 Male, age 76, both hemispheres 37.8
Periaquaductal grey, lateral
nTPM: 37.4
2053 Male, age 18, unknown 38.7
2272 Male, age 74, both hemispheres 38.6
2140 Male, age 76, both hemispheres 34.7
Pretectal area
nTPM: 50.0
2007 Male, age 72, unknown 65.3
1816 Male, age 51, unknown 64.9
1944 Female, age 72, unknown 62.3
1817 Female, age 42, unknown 61.5
1815 Male, age 53, unknown 58.3
2407 Male, age 75, both hemispheres 47.3
2667 Female, age 75, unknown 44.3
2825 Male, age 18, unknown 38.2
2224 Female, age 72, unknown 37.7
2316 Male, age 76, right hemisphere 35.2
2273 Male, age 74, both hemispheres 34.7
Red nucleus
nTPM: 40.8
2785 Male, age 18, unknown 47.7
2588 Male, age 74, left hemisphere 45.6
1821 Female, age 72, unknown 42.9
2584 Male, age 75, left hemisphere 42.8
2503 Female, age 72, unknown 41.2
2725 Female, age 75, unknown 41.2
1954 Female, age 42, unknown 41.0
1865 Male, age 51, unknown 40.4
1904 Male, age 53, unknown 39.1
2823 Male, age 76, right hemisphere 37.8
2769 Male, age 72, unknown 35.6
2227 Male, age 72, unknown 34.8
Substantia nigra
nTPM: 48.5
1916 Female, age 42, unknown 62.5
2665 Male, age 74, both hemispheres 57.4
1889 Female, age 72, unknown 52.8
1851 Male, age 51, unknown 52.7
2241 Male, age 72, unknown 47.9
1941 Male, age 53, unknown 47.3
2583 Male, age 75, right hemisphere 44.6
2699 Male, age 18, unknown 44.3
2590 Female, age 75, unknown 43.6
2409 Female, age 72, unknown 31.8
Superior colliculus
nTPM: 45.5
2668 Female, age 75, unknown 54.9
2087 Female, age 72, unknown 53.3
1796 Male, age 53, unknown 48.9
2261 Male, age 18, unknown 47.9
2664 Male, age 75, both hemispheres 47.6
1913 Female, age 42, unknown 42.0
2587 Male, age 74, left hemisphere 41.2
1895 Male, age 76, right hemisphere 41.1
1839 Male, age 51, unknown 40.1
1995 Male, age 72, unknown 38.2
Ventral tegmental area
nTPM: 44.4
2218 Male, age 76, both hemispheres 53.0
2410 Female, age 72, unknown 49.2
1915 Female, age 42, unknown 47.4
1942 Male, age 51, unknown 40.5
2223 Female, age 72, unknown 39.4
2021 Male, age 53, unknown 36.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.2
Samples: 139

Max nTPM: 85.7
Min nTPM: 26.1
Std nTPM: 10.7
Median nTPM: 52.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 82.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 76.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 75.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 74.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 74.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 72.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 72.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 72.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 71.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 69.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.9
FF:10158-103A5 76 years, female 91.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.9
Samples: 4

Max nTPM: 64.9
Min nTPM: 47.2
Sample A Female 64.9
Sample B Female 47.2
Sample C Male 55.9
Sample D Male 51.7
Midbrain
nTPM: 57.4
Samples: 4

Max nTPM: 65.4
Min nTPM: 51.6
Sample A Female 65.4
Sample B Female 55.9
Sample C Male 56.8
Sample D Male 51.6
Periaqueductal gray
nTPM: 48.9
Samples: 3

Max nTPM: 51.8
Min nTPM: 44.5
Sample B Female 50.4
Sample C Male 51.8
Sample D Male 44.5
Superior colliculi
nTPM: 56.1
Samples: 4

Max nTPM: 61.4
Min nTPM: 47.9
Sample A Female 61.4
Sample B Female 47.9
Sample C Male 61.1
Sample D Male 53.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.1
Samples: 4

Max nTPM: 78.7
Min nTPM: 74.6
Sample A Male 78.7
Sample B Male 78.7
Sample C Female 76.5
Sample D Female 74.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
275684 Antisense, RP_040617_01_B05, Mouse strain C57BL/6J (56 days, male) 2.9

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