HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:29.3 nTPM
HPA Brain:49.7 nTPM
GTEx:29.3 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:27.3 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA056448
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.7
Sample id Sample description nTPM
Hippocampus
nTPM: 42.6
1898 Male, age 80, left hemisphere 61.1
2621 Female, age 67, right hemisphere 51.9
1855 Male, age 76, left hemisphere 41.3
2148 Female, age 91, left hemisphere 36.3
1911 Female, age 85, right hemisphere 32.7
2529 Female, age 94, left hemisphere 32.0
Dentate gyrus
nTPM: 40.3
2530 Female, age 94, left hemisphere 46.1
1927 Female, age 91, both hemispheres 43.7
2010 Male, age 76, both hemispheres 40.9
2528 Male, age 74, both hemispheres 39.3
2246 Female, age 85, both hemispheres 37.1
2531 Female, age 67, both hemispheres 34.5
Entorhinal gyrus
nTPM: 43.4
2613 Female, age 94, left hemisphere 52.0
2764 Male, age 80, right hemisphere 50.7
1787 Male, age 76, left hemisphere 49.0
1938 Female, age 85, left hemisphere 41.5
2117 Female, age 91, right hemisphere 40.2
2686 Male, age 75, right hemisphere 27.1
Hippocampus, CA1
nTPM: 44.1
2749 Male, age 80, left hemisphere 67.9
1873 Female, age 85, both hemispheres 42.5
2527 Male, age 74, both hemispheres 41.6
2045 Male, age 76, both hemispheres 36.7
2082 Female, age 91, right hemisphere 31.9
Hippocampus, CA2
nTPM: 43.2
1892 Male, age 76, both hemispheres 50.0
1963 Male, age 80, left hemisphere 47.9
2437 Female, age 94, left hemisphere 46.2
2249 Male, age 74, both hemispheres 45.2
1940 Female, age 85, left hemisphere 37.0
2113 Female, age 91, right hemisphere 33.1
Hippocampus, CA3
nTPM: 42.9
2436 Male, age 74, both hemispheres 56.2
1867 Male, age 76, both hemispheres 50.2
2137 Male, age 80, left hemisphere 44.5
2620 Female, age 94, left hemisphere 40.8
1891 Female, age 85, both hemispheres 36.6
2861 Female, age 67, both hemispheres 28.9
Parahippocampal cortex
nTPM: 40.0
1850 Male, age 80, both hemispheres 46.5
1933 Female, age 85, both hemispheres 46.3
2018 Male, age 76, both hemispheres 43.9
2250 Female, age 67, right hemisphere 43.1
2245 Female, age 91, both hemispheres 39.9
2532 Female, age 72, left hemisphere 39.3
1990 Female, age 91, right hemisphere 38.8
2693 Female, age 94, both hemispheres 38.2
2692 Male, age 74, both hemispheres 32.6
2622 Female, age 67, right hemisphere 31.1
Perirhinal gyrus
nTPM: 49.7
1847 Female, age 91, left hemisphere 61.5
1794 Male, age 80, right hemisphere 57.5
1841 Female, age 85, right hemisphere 47.2
2521 Female, age 94, right hemisphere 43.7
2848 Male, age 76, right hemisphere 38.6
Subiculum
nTPM: 43.4
1977 Female, age 85, both hemispheres 50.9
1901 Male, age 80, both hemispheres 47.9
2619 Male, age 74, both hemispheres 47.0
2438 Female, age 94, left hemisphere 44.4
2042 Male, age 76, both hemispheres 38.1
2729 Female, age 91, right hemisphere 31.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.3
Samples: 197

Max nTPM: 54.1
Min nTPM: 15.0
Std nTPM: 7.2
Median nTPM: 28.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 54.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 52.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 47.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 47.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 46.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 45.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 44.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 43.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 41.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 41.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 41.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.2
FF:10169-103B7 60 years, female 61.2
FF:10153-102I9 76 years, female 41.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Subiculum
nTPM: 12.7
Samples: 4

Max nTPM: 13.1
Min nTPM: 11.9
Sample A Female 12.8
Sample B Female 13.1
Sample C Male 12.9
Sample D Male 11.9
Dorsal hippocampus
nTPM: 12.7
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.9
Sample A Female 12.6
Sample B Female 13.9
Sample C Male 11.9
Sample D Male 12.5
Entorhinal cortex
nTPM: 13.2
Samples: 4

Max nTPM: 13.4
Min nTPM: 13.0
Sample A Female 13.3
Sample B Female 13.0
Sample C Male 13.0
Sample D Male 13.4
Ventral hippocampus
nTPM: 13.5
Samples: 4

Max nTPM: 14.2
Min nTPM: 12.8
Sample A Female 13.9
Sample B Female 12.8
Sample C Male 14.2
Sample D Male 13.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.3
Samples: 4

Max nTPM: 29.2
Min nTPM: 26.1
Sample A Male 26.9
Sample B Male 29.2
Sample C Female 26.1
Sample D Female 26.9
Hippocampal formation
nTPM: 27.3
Samples: 4

Max nTPM: 30.3
Min nTPM: 25.2
Sample A Male 27.9
Sample B Male 25.7
Sample C Female 25.2
Sample D Female 30.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
68077012 Antisense, RP_040929_01_C05, Mouse strain C57BL/6J (56 days, male) 0.3

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