MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.1 nTPM
HPA Brain:47.2 nTPM
GTEx:29.1 nTPM
FANTOM5:42.7 Scaled Tags Per Million
Pig:13.3 nTPM
Mouse:25.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.9
2019 Male, age 18, unknown 47.2
2411 Female, age 72, unknown 45.8
1827 Male, age 72, unknown 40.5
2586 Male, age 75, left hemisphere 40.5
2828 Female, age 72, unknown 35.5
2666 Male, age 74, left hemisphere 35.3
2219 Male, age 76, both hemispheres 34.6
1870 Female, age 42, unknown 34.0
1833 Male, age 53, unknown 33.6
1830 Male, age 51, unknown 32.1
Dorsal raphe nucleus
nTPM: 40.4
2298 Female, age 72, unknown 47.1
2047 Male, age 72, unknown 46.3
1828 Male, age 53, unknown 40.7
2750 Male, age 76, both hemispheres 36.6
2016 Female, age 72, unknown 31.3
Inferior colliculus
nTPM: 34.0
1848 Female, age 42, unknown 35.8
2097 Female, age 72, unknown 34.5
1890 Male, age 53, unknown 34.2
2849 Male, age 72, unknown 31.5
Median raphe nucleus
nTPM: 40.0
2220 Male, age 76, midline 40.0
Periaquaductal grey, anterior
nTPM: 39.8
1947 Male, age 18, unknown 42.6
2502 Female, age 75, unknown 40.1
1795 Male, age 51, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 31.1
1831 Male, age 72, unknown 33.6
2850 Male, age 76, both hemispheres 32.6
1840 Male, age 53, unknown 32.0
2464 Female, age 72, unknown 26.4
Periaquaductal grey, lateral
nTPM: 34.5
2272 Male, age 74, both hemispheres 39.7
2053 Male, age 18, unknown 35.5
2140 Male, age 76, both hemispheres 28.4
Pretectal area
nTPM: 43.0
1816 Male, age 51, unknown 54.1
1817 Female, age 42, unknown 53.9
2007 Male, age 72, unknown 51.9
1944 Female, age 72, unknown 49.2
1815 Male, age 53, unknown 46.2
2667 Female, age 75, unknown 39.1
2224 Female, age 72, unknown 37.4
2273 Male, age 74, both hemispheres 37.2
2407 Male, age 75, both hemispheres 36.9
2825 Male, age 18, unknown 33.7
2316 Male, age 76, right hemisphere 33.5
Red nucleus
nTPM: 36.6
1821 Female, age 72, unknown 47.4
2725 Female, age 75, unknown 43.2
2785 Male, age 18, unknown 41.3
2588 Male, age 74, left hemisphere 38.2
2584 Male, age 75, left hemisphere 36.7
1904 Male, age 53, unknown 35.5
1865 Male, age 51, unknown 33.9
2769 Male, age 72, unknown 33.3
2227 Male, age 72, unknown 33.1
1954 Female, age 42, unknown 32.7
2823 Male, age 76, right hemisphere 31.8
2503 Female, age 72, unknown 31.6
Substantia nigra
nTPM: 47.2
1916 Female, age 42, unknown 68.6
1851 Male, age 51, unknown 58.4
1941 Male, age 53, unknown 51.7
1889 Female, age 72, unknown 48.4
2665 Male, age 74, both hemispheres 44.1
2583 Male, age 75, right hemisphere 40.9
2409 Female, age 72, unknown 40.8
2699 Male, age 18, unknown 40.4
2590 Female, age 75, unknown 39.6
2241 Male, age 72, unknown 38.9
Superior colliculus
nTPM: 35.5
2587 Male, age 74, left hemisphere 40.8
1796 Male, age 53, unknown 39.3
1895 Male, age 76, right hemisphere 38.9
2087 Female, age 72, unknown 38.4
2668 Female, age 75, unknown 37.2
1839 Male, age 51, unknown 35.5
1995 Male, age 72, unknown 32.6
2261 Male, age 18, unknown 31.9
1913 Female, age 42, unknown 30.6
2664 Male, age 75, both hemispheres 29.5
Ventral tegmental area
nTPM: 45.7
2410 Female, age 72, unknown 66.4
1915 Female, age 42, unknown 49.9
2218 Male, age 76, both hemispheres 47.9
1942 Male, age 51, unknown 37.3
2223 Female, age 72, unknown 37.0
2021 Male, age 53, unknown 35.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.1
Samples: 139

Max nTPM: 55.5
Min nTPM: 15.3
Std nTPM: 8.3
Median nTPM: 27.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 55.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 51.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 51.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 49.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 45.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 43.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 43.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 43.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.7
FF:10158-103A5 76 years, female 42.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.0
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.4
Sample A Female 13.4
Sample B Female 10.4
Sample C Male 12.1
Sample D Male 12.1
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 11.0
Sample C Male 15.5
Sample D Male 13.1
Periaqueductal gray
nTPM: 11.5
Samples: 3

Max nTPM: 11.6
Min nTPM: 11.3
Sample B Female 11.6
Sample C Male 11.5
Sample D Male 11.3
Superior colliculi
nTPM: 13.3
Samples: 4

Max nTPM: 15.9
Min nTPM: 11.4
Sample A Female 13.1
Sample B Female 11.4
Sample C Male 15.9
Sample D Male 12.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 27.2
Min nTPM: 22.9
Sample A Male 26.0
Sample B Male 25.6
Sample C Female 22.9
Sample D Female 27.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68077012 Antisense, RP_040929_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1

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