MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:45.9 nTPM
GTEx:11.6 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:23.5 nTPM
Mouse:16.3 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.9
2219 Male, age 76, both hemispheres 81.2
2586 Male, age 75, left hemisphere 67.0
2828 Female, age 72, unknown 48.0
1827 Male, age 72, unknown 43.7
2666 Male, age 74, left hemisphere 43.6
1833 Male, age 53, unknown 40.1
1870 Female, age 42, unknown 37.8
1830 Male, age 51, unknown 35.5
2019 Male, age 18, unknown 32.1
2411 Female, age 72, unknown 29.8
Dorsal raphe nucleus
nTPM: 33.9
2047 Male, age 72, unknown 38.6
1828 Male, age 53, unknown 35.4
2750 Male, age 76, both hemispheres 33.0
2016 Female, age 72, unknown 31.6
2298 Female, age 72, unknown 31.0
Inferior colliculus
nTPM: 41.3
2849 Male, age 72, unknown 55.5
1848 Female, age 42, unknown 41.1
1890 Male, age 53, unknown 37.5
2097 Female, age 72, unknown 31.3
Median raphe nucleus
nTPM: 43.8
2220 Male, age 76, midline 43.8
Periaquaductal grey, anterior
nTPM: 44.2
1795 Male, age 51, unknown 48.3
2502 Female, age 75, unknown 46.1
1947 Male, age 18, unknown 38.3
Periaquaductal grey, dorsal
nTPM: 41.9
1840 Male, age 53, unknown 48.5
2850 Male, age 76, both hemispheres 41.8
2464 Female, age 72, unknown 39.6
1831 Male, age 72, unknown 37.8
Periaquaductal grey, lateral
nTPM: 38.0
2053 Male, age 18, unknown 40.4
2140 Male, age 76, both hemispheres 39.7
2272 Male, age 74, both hemispheres 34.0
Pretectal area
nTPM: 44.6
1816 Male, age 51, unknown 55.9
2407 Male, age 75, both hemispheres 50.3
2007 Male, age 72, unknown 47.7
2667 Female, age 75, unknown 46.4
1815 Male, age 53, unknown 46.1
2825 Male, age 18, unknown 45.7
1944 Female, age 72, unknown 45.6
1817 Female, age 42, unknown 45.0
2224 Female, age 72, unknown 41.0
2316 Male, age 76, right hemisphere 34.6
2273 Male, age 74, both hemispheres 32.6
Red nucleus
nTPM: 34.9
2584 Male, age 75, left hemisphere 49.8
2588 Male, age 74, left hemisphere 39.7
2785 Male, age 18, unknown 38.5
2725 Female, age 75, unknown 37.1
2769 Male, age 72, unknown 36.7
2227 Male, age 72, unknown 34.6
2823 Male, age 76, right hemisphere 34.3
2503 Female, age 72, unknown 30.9
1865 Male, age 51, unknown 30.8
1904 Male, age 53, unknown 30.8
1954 Female, age 42, unknown 29.0
1821 Female, age 72, unknown 26.7
Substantia nigra
nTPM: 41.7
2665 Male, age 74, both hemispheres 54.4
2699 Male, age 18, unknown 50.3
2583 Male, age 75, right hemisphere 48.4
1916 Female, age 42, unknown 46.7
1851 Male, age 51, unknown 43.6
1889 Female, age 72, unknown 39.4
2590 Female, age 75, unknown 37.9
1941 Male, age 53, unknown 34.8
2409 Female, age 72, unknown 32.2
2241 Male, age 72, unknown 29.7
Superior colliculus
nTPM: 44.8
2664 Male, age 75, both hemispheres 67.8
1796 Male, age 53, unknown 52.7
2261 Male, age 18, unknown 45.8
2087 Female, age 72, unknown 43.8
1839 Male, age 51, unknown 42.7
2668 Female, age 75, unknown 40.3
1913 Female, age 42, unknown 40.1
2587 Male, age 74, left hemisphere 38.8
1895 Male, age 76, right hemisphere 38.6
1995 Male, age 72, unknown 37.3
Ventral tegmental area
nTPM: 41.2
2223 Female, age 72, unknown 53.6
2218 Male, age 76, both hemispheres 42.3
2021 Male, age 53, unknown 41.5
1942 Male, age 51, unknown 39.1
1915 Female, age 42, unknown 37.7
2410 Female, age 72, unknown 32.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 21.0
Min nTPM: 5.4
Std nTPM: 3.1
Median nTPM: 11.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 21.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 18.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 18.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 17.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 17.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 17.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 17.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 17.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 17.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 16.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 16.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.9
FF:10158-103A5 76 years, female 19.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.5
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.2
Sample A Female 16.9
Sample B Female 15.2
Sample C Male 20.1
Sample D Male 17.8
Midbrain
nTPM: 23.6
Samples: 4

Max nTPM: 31.4
Min nTPM: 16.1
Sample A Female 22.5
Sample B Female 16.1
Sample C Male 31.4
Sample D Male 24.2
Periaqueductal gray
nTPM: 17.0
Samples: 3

Max nTPM: 18.9
Min nTPM: 15.9
Sample B Female 15.9
Sample C Male 18.9
Sample D Male 16.2
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 13.4
Sample A Female 20.9
Sample B Female 13.4
Sample C Male 24.2
Sample D Male 23.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.7
Sample A Male 16.5
Sample B Male 14.7
Sample C Female 17.2
Sample D Female 16.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69524515 Antisense, RP_050419_04_E04, Mouse strain C57BL/6J (56 days, male) 3.0
71250309 Antisense, RP_050419_04_E04, Mouse strain C57BL/6J (56 days, male) 1.8

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