MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:268.7 nTPM
HPA Brain:689.0 nTPM
GTEx:268.7 nTPM
FANTOM5:654.8 Scaled Tags Per Million
Pig:400.6 nTPM
Mouse:622.0 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 689.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 466.3
2411 Female, age 72, unknown 659.8
1830 Male, age 51, unknown 642.8
1833 Male, age 53, unknown 609.9
2019 Male, age 18, unknown 599.9
1870 Female, age 42, unknown 541.3
2828 Female, age 72, unknown 445.7
2219 Male, age 76, both hemispheres 348.9
1827 Male, age 72, unknown 311.6
2666 Male, age 74, left hemisphere 270.6
2586 Male, age 75, left hemisphere 232.2
Dorsal raphe nucleus
nTPM: 349.2
2750 Male, age 76, both hemispheres 739.2
2016 Female, age 72, unknown 330.9
1828 Male, age 53, unknown 313.2
2047 Male, age 72, unknown 186.8
2298 Female, age 72, unknown 175.7
Inferior colliculus
nTPM: 285.3
2849 Male, age 72, unknown 317.8
1848 Female, age 42, unknown 308.3
1890 Male, age 53, unknown 299.4
2097 Female, age 72, unknown 215.7
Median raphe nucleus
nTPM: 312.5
2220 Male, age 76, midline 312.5
Periaquaductal grey, anterior
nTPM: 206.9
1947 Male, age 18, unknown 246.1
1795 Male, age 51, unknown 198.3
2502 Female, age 75, unknown 176.3
Periaquaductal grey, dorsal
nTPM: 183.2
2464 Female, age 72, unknown 322.6
1831 Male, age 72, unknown 205.0
2850 Male, age 76, both hemispheres 102.7
1840 Male, age 53, unknown 102.3
Periaquaductal grey, lateral
nTPM: 246.1
2272 Male, age 74, both hemispheres 379.0
2053 Male, age 18, unknown 237.5
2140 Male, age 76, both hemispheres 122.0
Pretectal area
nTPM: 282.2
1815 Male, age 53, unknown 422.6
2316 Male, age 76, right hemisphere 422.6
2407 Male, age 75, both hemispheres 389.0
2273 Male, age 74, both hemispheres 316.9
1817 Female, age 42, unknown 315.9
2007 Male, age 72, unknown 291.2
2825 Male, age 18, unknown 281.2
2224 Female, age 72, unknown 229.4
1944 Female, age 72, unknown 153.0
2667 Female, age 75, unknown 151.5
1816 Male, age 51, unknown 130.8
Red nucleus
nTPM: 689.0
2823 Male, age 76, right hemisphere 887.9
1865 Male, age 51, unknown 807.4
1821 Female, age 72, unknown 804.1
1904 Male, age 53, unknown 802.9
2227 Male, age 72, unknown 730.5
2769 Male, age 72, unknown 730.4
2725 Female, age 75, unknown 674.7
2785 Male, age 18, unknown 655.3
1954 Female, age 42, unknown 640.8
2503 Female, age 72, unknown 607.1
2588 Male, age 74, left hemisphere 490.4
2584 Male, age 75, left hemisphere 436.1
Substantia nigra
nTPM: 339.2
2590 Female, age 75, unknown 547.3
2583 Male, age 75, right hemisphere 427.9
1851 Male, age 51, unknown 405.2
1889 Female, age 72, unknown 383.5
2409 Female, age 72, unknown 367.4
2699 Male, age 18, unknown 332.0
1941 Male, age 53, unknown 283.6
1916 Female, age 42, unknown 254.6
2241 Male, age 72, unknown 233.9
2665 Male, age 74, both hemispheres 157.1
Superior colliculus
nTPM: 378.5
1995 Male, age 72, unknown 586.4
1913 Female, age 42, unknown 552.8
1895 Male, age 76, right hemisphere 530.7
2587 Male, age 74, left hemisphere 427.8
2668 Female, age 75, unknown 409.4
1839 Male, age 51, unknown 404.6
1796 Male, age 53, unknown 298.7
2087 Female, age 72, unknown 213.4
2261 Male, age 18, unknown 183.5
2664 Male, age 75, both hemispheres 177.1
Ventral tegmental area
nTPM: 439.4
2223 Female, age 72, unknown 805.7
2410 Female, age 72, unknown 524.4
2218 Male, age 76, both hemispheres 376.4
1942 Male, age 51, unknown 327.7
1915 Female, age 42, unknown 311.4
2021 Male, age 53, unknown 290.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 268.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 268.7
Samples: 139

Max nTPM: 1185.2
Min nTPM: 47.2
Std nTPM: 180.3
Median nTPM: 210.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1185.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 844.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 823.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 779.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 758.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 703.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 695.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 658.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 595.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 588.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 571.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 654.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 654.8
FF:10158-103A5 76 years, female 654.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 400.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 375.8
Samples: 4

Max nTPM: 667.5
Min nTPM: 192.5
Sample A Female 360.5
Sample B Female 192.5
Sample C Male 282.5
Sample D Male 667.5
Midbrain
nTPM: 400.6
Samples: 4

Max nTPM: 902.6
Min nTPM: 177.5
Sample A Female 902.6
Sample B Female 318.4
Sample C Male 177.5
Sample D Male 204.0
Periaqueductal gray
nTPM: 207.2
Samples: 3

Max nTPM: 246.3
Min nTPM: 160.8
Sample B Female 246.3
Sample C Male 160.8
Sample D Male 214.4
Superior colliculi
nTPM: 281.3
Samples: 4

Max nTPM: 360.2
Min nTPM: 119.9
Sample A Female 360.2
Sample B Female 119.9
Sample C Male 286.1
Sample D Male 358.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 622.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 622.0
Samples: 4

Max nTPM: 684.8
Min nTPM: 524.4
Sample A Male 603.5
Sample B Male 524.4
Sample C Female 675.3
Sample D Female 684.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
69736418 Antisense, RP_050503_04_G05, Mouse strain C57BL/6J (56 days, male) 12.3

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