HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:27.0 nTPM
GTEx:12.3 nTPM
FANTOM5:106.6 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:30.3 nTPM
Allen mouse:22.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000538
Glial cells High
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Hippocampus
nTPM: 26.0
1898 Male, age 80, left hemisphere 28.9
2621 Female, age 67, right hemisphere 26.3
2529 Female, age 94, left hemisphere 25.9
1911 Female, age 85, right hemisphere 25.4
1855 Male, age 76, left hemisphere 25.2
2148 Female, age 91, left hemisphere 24.4
Dentate gyrus
nTPM: 23.7
2530 Female, age 94, left hemisphere 25.5
2531 Female, age 67, both hemispheres 24.7
1927 Female, age 91, both hemispheres 24.5
2246 Female, age 85, both hemispheres 23.9
2010 Male, age 76, both hemispheres 22.3
2528 Male, age 74, both hemispheres 21.2
Entorhinal gyrus
nTPM: 21.7
2686 Male, age 75, right hemisphere 25.3
1938 Female, age 85, left hemisphere 22.8
2613 Female, age 94, left hemisphere 22.3
2117 Female, age 91, right hemisphere 21.2
1787 Male, age 76, left hemisphere 20.0
2764 Male, age 80, right hemisphere 18.7
Hippocampus, CA1
nTPM: 27.0
2749 Male, age 80, left hemisphere 33.8
1873 Female, age 85, both hemispheres 31.4
2527 Male, age 74, both hemispheres 25.6
2045 Male, age 76, both hemispheres 24.5
2082 Female, age 91, right hemisphere 19.4
Hippocampus, CA2
nTPM: 24.6
1892 Male, age 76, both hemispheres 32.6
1963 Male, age 80, left hemisphere 28.0
2249 Male, age 74, both hemispheres 23.0
2437 Female, age 94, left hemisphere 21.9
2113 Female, age 91, right hemisphere 21.4
1940 Female, age 85, left hemisphere 20.7
Hippocampus, CA3
nTPM: 26.4
2137 Male, age 80, left hemisphere 31.5
1867 Male, age 76, both hemispheres 28.5
2861 Female, age 67, both hemispheres 26.2
1891 Female, age 85, both hemispheres 25.9
2620 Female, age 94, left hemisphere 24.8
2436 Male, age 74, both hemispheres 21.5
Parahippocampal cortex
nTPM: 23.5
2245 Female, age 91, both hemispheres 28.2
2250 Female, age 67, right hemisphere 24.9
2622 Female, age 67, right hemisphere 24.9
1933 Female, age 85, both hemispheres 23.4
2532 Female, age 72, left hemisphere 23.2
2692 Male, age 74, both hemispheres 23.2
1850 Male, age 80, both hemispheres 22.9
2693 Female, age 94, both hemispheres 22.7
1990 Female, age 91, right hemisphere 21.9
2018 Male, age 76, both hemispheres 20.1
Perirhinal gyrus
nTPM: 23.0
2521 Female, age 94, right hemisphere 23.7
2848 Male, age 76, right hemisphere 23.7
1841 Female, age 85, right hemisphere 22.8
1794 Male, age 80, right hemisphere 22.4
1847 Female, age 91, left hemisphere 22.2
Subiculum
nTPM: 23.7
2438 Female, age 94, left hemisphere 28.5
1901 Male, age 80, both hemispheres 25.3
2042 Male, age 76, both hemispheres 22.7
1977 Female, age 85, both hemispheres 22.5
2619 Male, age 74, both hemispheres 21.7
2729 Female, age 91, right hemisphere 21.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.3
Samples: 197

Max nTPM: 45.5
Min nTPM: 3.2
Std nTPM: 4.9
Median nTPM: 11.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 45.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 26.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 25.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 25.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 25.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 24.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 23.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 22.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 22.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 20.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 19.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 106.6
FF:10169-103B7 60 years, female 144.3
FF:10153-102I9 76 years, female 68.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Subiculum
nTPM: 36.9
Samples: 4

Max nTPM: 42.4
Min nTPM: 33.6
Sample A Female 42.4
Sample B Female 33.6
Sample C Male 34.9
Sample D Male 36.8
Dorsal hippocampus
nTPM: 39.0
Samples: 4

Max nTPM: 43.9
Min nTPM: 34.0
Sample A Female 40.7
Sample B Female 37.3
Sample C Male 43.9
Sample D Male 34.0
Entorhinal cortex
nTPM: 40.9
Samples: 4

Max nTPM: 44.6
Min nTPM: 39.1
Sample A Female 40.0
Sample B Female 44.6
Sample C Male 39.1
Sample D Male 39.9
Ventral hippocampus
nTPM: 34.6
Samples: 4

Max nTPM: 40.8
Min nTPM: 28.2
Sample A Female 40.8
Sample B Female 31.5
Sample C Male 28.2
Sample D Male 38.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.3
Samples: 4

Max nTPM: 31.9
Min nTPM: 28.2
Sample A Male 28.2
Sample B Male 31.9
Sample C Female 29.7
Sample D Female 31.3
Hippocampal formation
nTPM: 28.8
Samples: 4

Max nTPM: 33.8
Min nTPM: 24.9
Sample A Male 33.8
Sample B Male 31.4
Sample C Female 24.9
Sample D Female 25.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.3
199216 Antisense, RP_040604_02_E07, Mouse strain C57BL/6J (56 days, male) 22.3

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