MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA Brain:27.0 nTPM
GTEx:9.9 nTPM
FANTOM5:69.4 Scaled Tags Per Million
Pig:39.9 nTPM
Mouse:28.8 nTPM
Allen mouse:15.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.5
2219 Male, age 76, both hemispheres 26.8
1827 Male, age 72, unknown 25.3
2666 Male, age 74, left hemisphere 24.4
2586 Male, age 75, left hemisphere 24.1
1830 Male, age 51, unknown 23.7
2411 Female, age 72, unknown 22.8
1833 Male, age 53, unknown 22.7
1870 Female, age 42, unknown 22.3
2828 Female, age 72, unknown 22.1
2019 Male, age 18, unknown 20.8
Dorsal raphe nucleus
nTPM: 21.5
2750 Male, age 76, both hemispheres 25.0
1828 Male, age 53, unknown 22.1
2047 Male, age 72, unknown 21.6
2298 Female, age 72, unknown 19.6
2016 Female, age 72, unknown 19.4
Inferior colliculus
nTPM: 21.4
2849 Male, age 72, unknown 23.2
1890 Male, age 53, unknown 21.1
2097 Female, age 72, unknown 20.9
1848 Female, age 42, unknown 20.1
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Periaquaductal grey, anterior
nTPM: 23.5
1947 Male, age 18, unknown 26.0
2502 Female, age 75, unknown 24.0
1795 Male, age 51, unknown 20.5
Periaquaductal grey, dorsal
nTPM: 22.6
1831 Male, age 72, unknown 23.5
1840 Male, age 53, unknown 22.7
2850 Male, age 76, both hemispheres 22.7
2464 Female, age 72, unknown 21.7
Periaquaductal grey, lateral
nTPM: 20.1
2053 Male, age 18, unknown 21.5
2140 Male, age 76, both hemispheres 20.5
2272 Male, age 74, both hemispheres 18.2
Pretectal area
nTPM: 24.2
1816 Male, age 51, unknown 30.7
1817 Female, age 42, unknown 28.3
1944 Female, age 72, unknown 27.8
2007 Male, age 72, unknown 26.8
1815 Male, age 53, unknown 24.8
2667 Female, age 75, unknown 23.7
2825 Male, age 18, unknown 22.9
2407 Male, age 75, both hemispheres 22.1
2224 Female, age 72, unknown 21.3
2316 Male, age 76, right hemisphere 19.1
2273 Male, age 74, both hemispheres 18.7
Red nucleus
nTPM: 23.3
2725 Female, age 75, unknown 26.7
2503 Female, age 72, unknown 26.3
2588 Male, age 74, left hemisphere 26.1
1904 Male, age 53, unknown 24.3
1821 Female, age 72, unknown 23.8
1954 Female, age 42, unknown 23.0
1865 Male, age 51, unknown 22.8
2823 Male, age 76, right hemisphere 22.5
2584 Male, age 75, left hemisphere 22.2
2785 Male, age 18, unknown 21.7
2769 Male, age 72, unknown 19.9
2227 Male, age 72, unknown 19.8
Substantia nigra
nTPM: 23.5
2241 Male, age 72, unknown 24.8
1889 Female, age 72, unknown 24.7
1916 Female, age 42, unknown 24.2
1941 Male, age 53, unknown 23.8
2409 Female, age 72, unknown 23.8
2699 Male, age 18, unknown 23.6
2665 Male, age 74, both hemispheres 23.3
1851 Male, age 51, unknown 22.9
2583 Male, age 75, right hemisphere 22.5
2590 Female, age 75, unknown 21.3
Superior colliculus
nTPM: 23.0
2087 Female, age 72, unknown 24.6
1895 Male, age 76, right hemisphere 24.5
2261 Male, age 18, unknown 24.1
1913 Female, age 42, unknown 23.7
2664 Male, age 75, both hemispheres 23.5
1796 Male, age 53, unknown 22.4
1839 Male, age 51, unknown 22.3
2668 Female, age 75, unknown 21.6
1995 Male, age 72, unknown 21.5
2587 Male, age 74, left hemisphere 21.4
Ventral tegmental area
nTPM: 22.7
2218 Male, age 76, both hemispheres 26.2
2223 Female, age 72, unknown 23.7
2410 Female, age 72, unknown 22.5
1915 Female, age 42, unknown 21.5
2021 Male, age 53, unknown 21.3
1942 Male, age 51, unknown 21.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.9
Samples: 139

Max nTPM: 44.6
Min nTPM: 3.8
Std nTPM: 4.4
Median nTPM: 9.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 44.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 21.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 20.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 18.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 17.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 17.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 17.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 16.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 16.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 16.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 15.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.4
FF:10158-103A5 76 years, female 69.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.5
Samples: 4

Max nTPM: 35.0
Min nTPM: 28.6
Sample A Female 33.7
Sample B Female 28.8
Sample C Male 35.0
Sample D Male 28.6
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 51.1
Min nTPM: 33.8
Sample A Female 33.8
Sample B Female 34.4
Sample C Male 51.1
Sample D Male 39.6
Periaqueductal gray
nTPM: 31.9
Samples: 3

Max nTPM: 32.3
Min nTPM: 31.6
Sample B Female 31.7
Sample C Male 32.3
Sample D Male 31.6
Superior colliculi
nTPM: 39.9
Samples: 4

Max nTPM: 52.6
Min nTPM: 28.9
Sample A Female 35.2
Sample B Female 28.9
Sample C Male 52.6
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 30.7
Min nTPM: 25.8
Sample A Male 29.1
Sample B Male 29.7
Sample C Female 25.8
Sample D Female 30.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.0
199216 Antisense, RP_040604_02_E07, Mouse strain C57BL/6J (56 days, male) 15.0

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