MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.6 nTPM
HPA Brain:107.8 nTPM
GTEx:53.6 nTPM
FANTOM5:59.6 Scaled Tags Per Million
Pig:51.3 nTPM
Mouse:18.2 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.8
1830 Male, age 51, unknown 103.1
1833 Male, age 53, unknown 101.1
2411 Female, age 72, unknown 100.2
2019 Male, age 18, unknown 99.4
2586 Male, age 75, left hemisphere 97.6
2828 Female, age 72, unknown 89.7
1870 Female, age 42, unknown 86.2
2666 Male, age 74, left hemisphere 80.3
1827 Male, age 72, unknown 72.3
2219 Male, age 76, both hemispheres 68.2
Dorsal raphe nucleus
nTPM: 61.0
2750 Male, age 76, both hemispheres 80.2
1828 Male, age 53, unknown 65.1
2016 Female, age 72, unknown 61.3
2047 Male, age 72, unknown 55.2
2298 Female, age 72, unknown 43.0
Inferior colliculus
nTPM: 61.9
2849 Male, age 72, unknown 67.1
1848 Female, age 42, unknown 66.5
1890 Male, age 53, unknown 62.4
2097 Female, age 72, unknown 51.5
Median raphe nucleus
nTPM: 65.8
2220 Male, age 76, midline 65.8
Periaquaductal grey, anterior
nTPM: 63.2
2502 Female, age 75, unknown 70.8
1947 Male, age 18, unknown 60.4
1795 Male, age 51, unknown 58.6
Periaquaductal grey, dorsal
nTPM: 56.0
2464 Female, age 72, unknown 64.2
2850 Male, age 76, both hemispheres 59.6
1831 Male, age 72, unknown 57.5
1840 Male, age 53, unknown 42.7
Periaquaductal grey, lateral
nTPM: 61.2
2053 Male, age 18, unknown 62.5
2272 Male, age 74, both hemispheres 61.4
2140 Male, age 76, both hemispheres 59.7
Pretectal area
nTPM: 67.3
1815 Male, age 53, unknown 83.2
2316 Male, age 76, right hemisphere 82.9
2407 Male, age 75, both hemispheres 80.2
1817 Female, age 42, unknown 77.7
2007 Male, age 72, unknown 74.6
2825 Male, age 18, unknown 66.5
2667 Female, age 75, unknown 64.4
1944 Female, age 72, unknown 54.2
2273 Male, age 74, both hemispheres 53.1
1816 Male, age 51, unknown 52.2
2224 Female, age 72, unknown 51.1
Red nucleus
nTPM: 107.8
2785 Male, age 18, unknown 122.0
1904 Male, age 53, unknown 120.1
2769 Male, age 72, unknown 117.5
2823 Male, age 76, right hemisphere 117.4
1865 Male, age 51, unknown 116.6
2227 Male, age 72, unknown 113.2
1821 Female, age 72, unknown 107.8
2588 Male, age 74, left hemisphere 102.5
1954 Female, age 42, unknown 97.9
2584 Male, age 75, left hemisphere 97.0
2503 Female, age 72, unknown 95.6
2725 Female, age 75, unknown 85.6
Substantia nigra
nTPM: 66.5
2583 Male, age 75, right hemisphere 86.2
2590 Female, age 75, unknown 83.4
2409 Female, age 72, unknown 72.5
1889 Female, age 72, unknown 71.8
2699 Male, age 18, unknown 69.0
1851 Male, age 51, unknown 66.7
2665 Male, age 74, both hemispheres 61.9
1941 Male, age 53, unknown 56.3
1916 Female, age 42, unknown 55.5
2241 Male, age 72, unknown 41.9
Superior colliculus
nTPM: 75.5
1995 Male, age 72, unknown 103.5
1913 Female, age 42, unknown 103.3
1839 Male, age 51, unknown 80.5
2664 Male, age 75, both hemispheres 73.6
2587 Male, age 74, left hemisphere 72.5
1895 Male, age 76, right hemisphere 71.8
1796 Male, age 53, unknown 67.9
2668 Female, age 75, unknown 66.4
2087 Female, age 72, unknown 59.9
2261 Male, age 18, unknown 55.9
Ventral tegmental area
nTPM: 72.7
2223 Female, age 72, unknown 92.4
2410 Female, age 72, unknown 86.8
1942 Male, age 51, unknown 69.6
2021 Male, age 53, unknown 66.3
2218 Male, age 76, both hemispheres 61.5
1915 Female, age 42, unknown 59.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.6
Samples: 139

Max nTPM: 187.5
Min nTPM: 23.1
Std nTPM: 21.2
Median nTPM: 51.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 187.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 168.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 112.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 105.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 97.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 80.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 79.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 77.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 75.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 75.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 73.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.6
FF:10158-103A5 76 years, female 59.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.3
Samples: 4

Max nTPM: 68.5
Min nTPM: 41.0
Sample A Female 50.1
Sample B Female 41.0
Sample C Male 45.5
Sample D Male 68.5
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 89.0
Min nTPM: 35.0
Sample A Female 89.0
Sample B Female 43.0
Sample C Male 36.2
Sample D Male 35.0
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 38.1
Min nTPM: 33.1
Sample B Female 36.6
Sample C Male 33.1
Sample D Male 38.1
Superior colliculi
nTPM: 47.4
Samples: 4

Max nTPM: 52.2
Min nTPM: 40.8
Sample A Female 52.2
Sample B Female 45.6
Sample C Male 40.8
Sample D Male 50.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.8
Sample A Male 21.0
Sample B Male 14.8
Sample C Female 15.3
Sample D Female 21.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
69736394 Antisense, RP_050503_04_F11, Mouse strain C57BL/6J (56 days, male) 7.7

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