MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:14.7 nTPM
GTEx:17.2 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:18.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
1870 Female, age 42, unknown 12.8
1827 Male, age 72, unknown 11.8
2411 Female, age 72, unknown 11.3
1830 Male, age 51, unknown 10.3
1833 Male, age 53, unknown 10.1
2219 Male, age 76, both hemispheres 9.7
2666 Male, age 74, left hemisphere 9.2
2586 Male, age 75, left hemisphere 9.1
2019 Male, age 18, unknown 7.8
2828 Female, age 72, unknown 7.6
Dorsal raphe nucleus
nTPM: 12.9
2047 Male, age 72, unknown 14.5
2298 Female, age 72, unknown 14.5
2016 Female, age 72, unknown 12.9
1828 Male, age 53, unknown 11.9
2750 Male, age 76, both hemispheres 10.7
Inferior colliculus
nTPM: 12.0
2097 Female, age 72, unknown 17.5
1890 Male, age 53, unknown 10.8
2849 Male, age 72, unknown 10.7
1848 Female, age 42, unknown 9.1
Median raphe nucleus
nTPM: 14.7
2220 Male, age 76, midline 14.7
Periaquaductal grey, anterior
nTPM: 13.3
1947 Male, age 18, unknown 16.6
1795 Male, age 51, unknown 13.4
2502 Female, age 75, unknown 9.9
Periaquaductal grey, dorsal
nTPM: 11.8
2850 Male, age 76, both hemispheres 13.1
1840 Male, age 53, unknown 13.0
1831 Male, age 72, unknown 10.9
2464 Female, age 72, unknown 10.3
Periaquaductal grey, lateral
nTPM: 12.5
2272 Male, age 74, both hemispheres 15.0
2140 Male, age 76, both hemispheres 11.8
2053 Male, age 18, unknown 10.7
Pretectal area
nTPM: 11.5
2273 Male, age 74, both hemispheres 16.1
2224 Female, age 72, unknown 14.1
1944 Female, age 72, unknown 12.4
2825 Male, age 18, unknown 11.6
1816 Male, age 51, unknown 11.3
1817 Female, age 42, unknown 11.3
2667 Female, age 75, unknown 11.1
2007 Male, age 72, unknown 10.6
2316 Male, age 76, right hemisphere 10.0
1815 Male, age 53, unknown 9.9
2407 Male, age 75, both hemispheres 8.5
Red nucleus
nTPM: 9.3
2725 Female, age 75, unknown 13.3
2584 Male, age 75, left hemisphere 10.7
1821 Female, age 72, unknown 10.6
1954 Female, age 42, unknown 9.8
1904 Male, age 53, unknown 9.1
2769 Male, age 72, unknown 9.0
2785 Male, age 18, unknown 8.5
2823 Male, age 76, right hemisphere 8.5
2503 Female, age 72, unknown 8.3
1865 Male, age 51, unknown 8.2
2227 Male, age 72, unknown 7.7
2588 Male, age 74, left hemisphere 7.4
Substantia nigra
nTPM: 12.3
2241 Male, age 72, unknown 17.0
1916 Female, age 42, unknown 15.4
1851 Male, age 51, unknown 13.5
1941 Male, age 53, unknown 13.0
1889 Female, age 72, unknown 12.9
2590 Female, age 75, unknown 12.1
2699 Male, age 18, unknown 11.2
2665 Male, age 74, both hemispheres 10.2
2409 Female, age 72, unknown 9.2
2583 Male, age 75, right hemisphere 8.8
Superior colliculus
nTPM: 10.0
2261 Male, age 18, unknown 12.9
1895 Male, age 76, right hemisphere 12.1
2587 Male, age 74, left hemisphere 10.9
1796 Male, age 53, unknown 10.6
2664 Male, age 75, both hemispheres 9.9
1839 Male, age 51, unknown 9.2
2668 Female, age 75, unknown 9.2
2087 Female, age 72, unknown 8.9
1913 Female, age 42, unknown 8.5
1995 Male, age 72, unknown 7.8
Ventral tegmental area
nTPM: 11.5
2218 Male, age 76, both hemispheres 12.7
1915 Female, age 42, unknown 11.9
2021 Male, age 53, unknown 11.8
1942 Male, age 51, unknown 11.5
2223 Female, age 72, unknown 11.1
2410 Female, age 72, unknown 9.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 139

Max nTPM: 35.0
Min nTPM: 8.4
Std nTPM: 5.0
Median nTPM: 16.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 35.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 32.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 30.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 30.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 29.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 26.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 25.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 25.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 24.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.5
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.2
Sample A Female 13.5
Sample B Female 11.0
Sample C Male 10.2
Sample D Male 11.4
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.3
Sample A Female 12.6
Sample B Female 10.4
Sample C Male 10.3
Sample D Male 11.3
Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 12.5
Min nTPM: 11.0
Sample B Female 11.0
Sample C Male 11.6
Sample D Male 12.5
Superior colliculi
nTPM: 11.8
Samples: 4

Max nTPM: 12.5
Min nTPM: 11.2
Sample A Female 11.8
Sample B Female 12.5
Sample C Male 11.8
Sample D Male 11.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.3
Sample A Male 21.3
Sample B Male 19.2
Sample C Female 16.3
Sample D Female 16.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68410249 Antisense, RP_041214_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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