MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.1 nTPM
HPA Brain:65.5 nTPM
GTEx:44.1 nTPM
FANTOM5:177.5 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:31.9 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.2
2019 Male, age 18, unknown 66.9
2411 Female, age 72, unknown 59.9
1830 Male, age 51, unknown 59.5
1833 Male, age 53, unknown 59.4
2586 Male, age 75, left hemisphere 56.5
1870 Female, age 42, unknown 56.4
2666 Male, age 74, left hemisphere 51.6
2828 Female, age 72, unknown 51.2
1827 Male, age 72, unknown 45.2
2219 Male, age 76, both hemispheres 45.1
Dorsal raphe nucleus
nTPM: 41.5
2750 Male, age 76, both hemispheres 61.7
1828 Male, age 53, unknown 43.5
2016 Female, age 72, unknown 37.9
2047 Male, age 72, unknown 34.2
2298 Female, age 72, unknown 30.2
Inferior colliculus
nTPM: 40.9
1890 Male, age 53, unknown 44.5
1848 Female, age 42, unknown 42.3
2849 Male, age 72, unknown 39.1
2097 Female, age 72, unknown 37.8
Median raphe nucleus
nTPM: 41.3
2220 Male, age 76, midline 41.3
Periaquaductal grey, anterior
nTPM: 38.1
2502 Female, age 75, unknown 43.5
1947 Male, age 18, unknown 37.4
1795 Male, age 51, unknown 33.4
Periaquaductal grey, dorsal
nTPM: 33.6
2464 Female, age 72, unknown 41.8
1831 Male, age 72, unknown 37.5
2850 Male, age 76, both hemispheres 28.5
1840 Male, age 53, unknown 26.7
Periaquaductal grey, lateral
nTPM: 36.0
2053 Male, age 18, unknown 38.2
2272 Male, age 74, both hemispheres 37.4
2140 Male, age 76, both hemispheres 32.5
Pretectal area
nTPM: 45.9
1815 Male, age 53, unknown 55.4
2316 Male, age 76, right hemisphere 54.1
1817 Female, age 42, unknown 52.2
2007 Male, age 72, unknown 52.2
2407 Male, age 75, both hemispheres 49.9
1816 Male, age 51, unknown 46.7
1944 Female, age 72, unknown 44.6
2667 Female, age 75, unknown 42.6
2825 Male, age 18, unknown 38.8
2224 Female, age 72, unknown 35.1
2273 Male, age 74, both hemispheres 33.8
Red nucleus
nTPM: 65.5
1865 Male, age 51, unknown 74.1
1904 Male, age 53, unknown 73.7
2823 Male, age 76, right hemisphere 72.2
2785 Male, age 18, unknown 70.7
2769 Male, age 72, unknown 66.7
2227 Male, age 72, unknown 66.1
2503 Female, age 72, unknown 64.8
2588 Male, age 74, left hemisphere 63.5
2584 Male, age 75, left hemisphere 63.2
1821 Female, age 72, unknown 59.5
1954 Female, age 42, unknown 58.5
2725 Female, age 75, unknown 52.8
Substantia nigra
nTPM: 46.8
2583 Male, age 75, right hemisphere 58.2
2590 Female, age 75, unknown 50.4
1851 Male, age 51, unknown 50.2
1889 Female, age 72, unknown 49.6
2409 Female, age 72, unknown 46.6
2665 Male, age 74, both hemispheres 45.3
2699 Male, age 18, unknown 43.1
1941 Male, age 53, unknown 42.5
2241 Male, age 72, unknown 41.4
1916 Female, age 42, unknown 40.3
Superior colliculus
nTPM: 51.1
1913 Female, age 42, unknown 70.9
1995 Male, age 72, unknown 62.1
2668 Female, age 75, unknown 53.2
1895 Male, age 76, right hemisphere 52.9
2087 Female, age 72, unknown 48.4
2587 Male, age 74, left hemisphere 46.9
2261 Male, age 18, unknown 45.7
1839 Male, age 51, unknown 44.1
2664 Male, age 75, both hemispheres 43.9
1796 Male, age 53, unknown 43.0
Ventral tegmental area
nTPM: 46.8
2223 Female, age 72, unknown 56.2
2410 Female, age 72, unknown 51.4
2218 Male, age 76, both hemispheres 46.6
1942 Male, age 51, unknown 43.9
2021 Male, age 53, unknown 41.8
1915 Female, age 42, unknown 41.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.1
Samples: 139

Max nTPM: 143.6
Min nTPM: 20.1
Std nTPM: 18.6
Median nTPM: 39.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 143.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 141.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 91.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 91.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 86.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 84.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 76.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 74.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 70.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 69.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 177.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 177.5
FF:10158-103A5 76 years, female 177.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 27.4
Min nTPM: 19.6
Sample A Female 27.4
Sample B Female 19.6
Sample C Male 24.9
Sample D Male 26.4
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 27.9
Min nTPM: 20.5
Sample A Female 27.9
Sample B Female 20.5
Sample C Male 24.0
Sample D Male 20.9
Periaqueductal gray
nTPM: 17.8
Samples: 3

Max nTPM: 19.3
Min nTPM: 16.2
Sample B Female 19.3
Sample C Male 18.0
Sample D Male 16.2
Superior colliculi
nTPM: 19.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 12.6
Sample A Female 21.2
Sample B Female 12.6
Sample C Male 19.6
Sample D Male 24.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 33.5
Min nTPM: 30.5
Sample A Male 32.8
Sample B Male 30.5
Sample C Female 33.5
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
69015206 Antisense, RP_050310_02_E05, Mouse strain C57BL/6J (56 days, male) 2.8

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