MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.3 nTPM
HPA Brain:112.7 nTPM
GTEx:39.3 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:156.7 nTPM
Mouse:125.0 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 112.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.0
2586 Male, age 75, left hemisphere 153.5
2828 Female, age 72, unknown 113.5
2666 Male, age 74, left hemisphere 109.5
1827 Male, age 72, unknown 107.0
2019 Male, age 18, unknown 93.4
2219 Male, age 76, both hemispheres 82.8
1870 Female, age 42, unknown 68.4
1833 Male, age 53, unknown 62.5
1830 Male, age 51, unknown 61.1
2411 Female, age 72, unknown 58.7
Dorsal raphe nucleus
nTPM: 64.0
1828 Male, age 53, unknown 71.2
2298 Female, age 72, unknown 67.2
2016 Female, age 72, unknown 62.9
2750 Male, age 76, both hemispheres 61.1
2047 Male, age 72, unknown 57.8
Inferior colliculus
nTPM: 83.1
2097 Female, age 72, unknown 94.9
1890 Male, age 53, unknown 91.4
2849 Male, age 72, unknown 73.8
1848 Female, age 42, unknown 72.1
Median raphe nucleus
nTPM: 58.0
2220 Male, age 76, midline 58.0
Periaquaductal grey, anterior
nTPM: 101.3
1795 Male, age 51, unknown 113.5
2502 Female, age 75, unknown 105.9
1947 Male, age 18, unknown 84.5
Periaquaductal grey, dorsal
nTPM: 74.8
1831 Male, age 72, unknown 91.1
1840 Male, age 53, unknown 71.3
2464 Female, age 72, unknown 69.8
2850 Male, age 76, both hemispheres 66.8
Periaquaductal grey, lateral
nTPM: 72.1
2053 Male, age 18, unknown 76.5
2140 Male, age 76, both hemispheres 73.0
2272 Male, age 74, both hemispheres 66.7
Pretectal area
nTPM: 112.7
1816 Male, age 51, unknown 192.2
2007 Male, age 72, unknown 158.8
1944 Female, age 72, unknown 150.6
1815 Male, age 53, unknown 141.7
1817 Female, age 42, unknown 136.3
2407 Male, age 75, both hemispheres 89.2
2667 Female, age 75, unknown 85.7
2316 Male, age 76, right hemisphere 75.4
2825 Male, age 18, unknown 73.6
2224 Female, age 72, unknown 68.4
2273 Male, age 74, both hemispheres 68.0
Red nucleus
nTPM: 79.4
2584 Male, age 75, left hemisphere 109.7
2785 Male, age 18, unknown 106.8
2725 Female, age 75, unknown 102.7
2588 Male, age 74, left hemisphere 92.6
2503 Female, age 72, unknown 82.8
2769 Male, age 72, unknown 69.6
2823 Male, age 76, right hemisphere 69.2
2227 Male, age 72, unknown 67.7
1904 Male, age 53, unknown 67.1
1954 Female, age 42, unknown 64.3
1821 Female, age 72, unknown 60.4
1865 Male, age 51, unknown 60.1
Substantia nigra
nTPM: 88.3
1889 Female, age 72, unknown 115.0
2665 Male, age 74, both hemispheres 112.0
1916 Female, age 42, unknown 104.0
2583 Male, age 75, right hemisphere 98.0
1851 Male, age 51, unknown 90.7
1941 Male, age 53, unknown 84.5
2590 Female, age 75, unknown 80.3
2699 Male, age 18, unknown 71.6
2409 Female, age 72, unknown 63.9
2241 Male, age 72, unknown 63.4
Superior colliculus
nTPM: 98.5
2087 Female, age 72, unknown 130.6
2261 Male, age 18, unknown 125.6
2664 Male, age 75, both hemispheres 123.3
1796 Male, age 53, unknown 113.8
2668 Female, age 75, unknown 91.3
1995 Male, age 72, unknown 90.2
1913 Female, age 42, unknown 87.7
2587 Male, age 74, left hemisphere 76.4
1839 Male, age 51, unknown 75.5
1895 Male, age 76, right hemisphere 71.0
Ventral tegmental area
nTPM: 77.3
1942 Male, age 51, unknown 83.1
1915 Female, age 42, unknown 82.8
2218 Male, age 76, both hemispheres 82.5
2223 Female, age 72, unknown 74.5
2410 Female, age 72, unknown 74.1
2021 Male, age 53, unknown 66.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.3
Samples: 139

Max nTPM: 63.4
Min nTPM: 16.7
Std nTPM: 9.6
Median nTPM: 39.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 63.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 62.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 62.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 59.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 59.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 58.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 56.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 56.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 55.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 55.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 156.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 108.0
Samples: 4

Max nTPM: 144.5
Min nTPM: 74.3
Sample A Female 120.3
Sample B Female 92.8
Sample C Male 144.5
Sample D Male 74.3
Midbrain
nTPM: 156.7
Samples: 4

Max nTPM: 288.1
Min nTPM: 85.7
Sample A Female 85.7
Sample B Female 97.7
Sample C Male 288.1
Sample D Male 155.3
Periaqueductal gray
nTPM: 87.9
Samples: 3

Max nTPM: 103.1
Min nTPM: 73.5
Sample B Female 87.0
Sample C Male 103.1
Sample D Male 73.5
Superior colliculi
nTPM: 144.6
Samples: 4

Max nTPM: 188.6
Min nTPM: 109.8
Sample A Female 130.5
Sample B Female 109.8
Sample C Male 188.6
Sample D Male 149.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.0
Samples: 4

Max nTPM: 132.6
Min nTPM: 112.7
Sample A Male 132.6
Sample B Male 112.7
Sample C Female 126.7
Sample D Female 128.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
74271623 Antisense, RP_060202_01_A01, Mouse strain C57BL/6J (56 days, male) 12.0
68151446 Antisense, RP_041116_01_C05, Mouse strain C57BL/6J (56 days, male) 4.6

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