HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:468.0 nTPM
HPA Brain:311.5 nTPM
GTEx:468.0 nTPM
FANTOM5:1025.3 Scaled Tags Per Million
Pig:1216.6 nTPM
Mouse:725.5 nTPM
Allen mouse:9.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008445Antibody CAB016200Antibody CAB021109Antibody CAB047350
Glial cells MediumMediumLowNot detected
Neuronal cells HighHighMediumLow









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 311.5
Sample id Sample description nTPM
Hippocampus
nTPM: 279.2
1898 Male, age 80, left hemisphere 363.4
1855 Male, age 76, left hemisphere 292.1
2529 Female, age 94, left hemisphere 273.0
2621 Female, age 67, right hemisphere 261.9
1911 Female, age 85, right hemisphere 259.6
2148 Female, age 91, left hemisphere 225.0
Dentate gyrus
nTPM: 265.6
2010 Male, age 76, both hemispheres 336.5
2246 Female, age 85, both hemispheres 297.2
1927 Female, age 91, both hemispheres 290.3
2530 Female, age 94, left hemisphere 276.9
2528 Male, age 74, both hemispheres 202.3
2531 Female, age 67, both hemispheres 190.3
Entorhinal gyrus
nTPM: 254.4
1938 Female, age 85, left hemisphere 325.9
2764 Male, age 80, right hemisphere 276.5
2117 Female, age 91, right hemisphere 266.6
1787 Male, age 76, left hemisphere 266.2
2686 Male, age 75, right hemisphere 229.7
2613 Female, age 94, left hemisphere 161.7
Hippocampus, CA1
nTPM: 311.5
2749 Male, age 80, left hemisphere 480.2
1873 Female, age 85, both hemispheres 301.1
2045 Male, age 76, both hemispheres 280.1
2527 Male, age 74, both hemispheres 258.7
2082 Female, age 91, right hemisphere 237.2
Hippocampus, CA2
nTPM: 271.1
1892 Male, age 76, both hemispheres 332.6
1963 Male, age 80, left hemisphere 332.2
2249 Male, age 74, both hemispheres 285.2
1940 Female, age 85, left hemisphere 241.3
2113 Female, age 91, right hemisphere 232.7
2437 Female, age 94, left hemisphere 202.3
Hippocampus, CA3
nTPM: 241.8
2137 Male, age 80, left hemisphere 348.4
1867 Male, age 76, both hemispheres 280.8
1891 Female, age 85, both hemispheres 270.0
2436 Male, age 74, both hemispheres 230.8
2620 Female, age 94, left hemisphere 162.6
2861 Female, age 67, both hemispheres 158.1
Parahippocampal cortex
nTPM: 253.0
1850 Male, age 80, both hemispheres 318.4
1933 Female, age 85, both hemispheres 287.1
1990 Female, age 91, right hemisphere 282.0
2250 Female, age 67, right hemisphere 273.7
2018 Male, age 76, both hemispheres 266.8
2245 Female, age 91, both hemispheres 263.2
2532 Female, age 72, left hemisphere 226.7
2693 Female, age 94, both hemispheres 214.9
2692 Male, age 74, both hemispheres 203.8
2622 Female, age 67, right hemisphere 192.8
Perirhinal gyrus
nTPM: 302.2
1847 Female, age 91, left hemisphere 333.6
1794 Male, age 80, right hemisphere 331.1
1841 Female, age 85, right hemisphere 305.3
2848 Male, age 76, right hemisphere 285.6
2521 Female, age 94, right hemisphere 255.5
Subiculum
nTPM: 258.5
1901 Male, age 80, both hemispheres 302.0
1977 Female, age 85, both hemispheres 298.8
2042 Male, age 76, both hemispheres 260.6
2729 Female, age 91, right hemisphere 248.1
2438 Female, age 94, left hemisphere 238.2
2619 Male, age 74, both hemispheres 203.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 468.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 468.0
Samples: 197

Max nTPM: 824.6
Min nTPM: 193.9
Std nTPM: 102.8
Median nTPM: 458.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 824.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 785.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 775.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 753.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 748.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 728.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 692.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 668.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 655.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 648.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 630.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1025.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1025.3
FF:10169-103B7 60 years, female 1172.5
FF:10153-102I9 76 years, female 878.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1216.6
Pig sample Sample description nTPM
Subiculum
nTPM: 1086.5
Samples: 4

Max nTPM: 1329.7
Min nTPM: 973.4
Sample A Female 1329.7
Sample B Female 1050.9
Sample C Male 973.4
Sample D Male 992.0
Dorsal hippocampus
nTPM: 1216.7
Samples: 4

Max nTPM: 1567.8
Min nTPM: 945.3
Sample A Female 1567.8
Sample B Female 1200.8
Sample C Male 1152.7
Sample D Male 945.3
Entorhinal cortex
nTPM: 1078.3
Samples: 4

Max nTPM: 1193.6
Min nTPM: 922.3
Sample A Female 1126.7
Sample B Female 1193.6
Sample C Male 1070.7
Sample D Male 922.3
Ventral hippocampus
nTPM: 1087.9
Samples: 4

Max nTPM: 1184.9
Min nTPM: 868.1
Sample A Female 1136.2
Sample B Female 868.1
Sample C Male 1184.9
Sample D Male 1162.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 725.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 675.1
Samples: 4

Max nTPM: 692.9
Min nTPM: 659.1
Sample A Male 659.1
Sample B Male 681.0
Sample C Female 667.3
Sample D Female 692.9
Hippocampal formation
nTPM: 725.5
Samples: 4

Max nTPM: 773.9
Min nTPM: 671.2
Sample A Male 773.9
Sample B Male 726.3
Sample C Female 730.5
Sample D Female 671.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.9
2739 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 9.9
2740 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 6.6

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