MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:142.9 nTPM
HPA Brain:170.8 nTPM
GTEx:142.9 nTPM
FANTOM5:725.5 Scaled Tags Per Million
Pig:213.7 nTPM
Mouse:72.3 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 170.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.7
1870 Female, age 42, unknown 185.0
2411 Female, age 72, unknown 176.2
1830 Male, age 51, unknown 170.6
1833 Male, age 53, unknown 167.1
2019 Male, age 18, unknown 152.0
2828 Female, age 72, unknown 117.7
2586 Male, age 75, left hemisphere 98.3
1827 Male, age 72, unknown 93.0
2219 Male, age 76, both hemispheres 79.0
2666 Male, age 74, left hemisphere 78.8
Dorsal raphe nucleus
nTPM: 105.7
2750 Male, age 76, both hemispheres 151.9
2016 Female, age 72, unknown 125.5
1828 Male, age 53, unknown 110.2
2047 Male, age 72, unknown 72.2
2298 Female, age 72, unknown 68.8
Inferior colliculus
nTPM: 91.1
1848 Female, age 42, unknown 97.7
1890 Male, age 53, unknown 91.5
2849 Male, age 72, unknown 88.5
2097 Female, age 72, unknown 86.6
Median raphe nucleus
nTPM: 94.8
2220 Male, age 76, midline 94.8
Periaquaductal grey, anterior
nTPM: 77.4
2502 Female, age 75, unknown 90.3
1947 Male, age 18, unknown 80.1
1795 Male, age 51, unknown 61.7
Periaquaductal grey, dorsal
nTPM: 79.4
2464 Female, age 72, unknown 105.4
2850 Male, age 76, both hemispheres 95.1
1831 Male, age 72, unknown 71.0
1840 Male, age 53, unknown 46.2
Periaquaductal grey, lateral
nTPM: 87.8
2140 Male, age 76, both hemispheres 90.4
2053 Male, age 18, unknown 89.0
2272 Male, age 74, both hemispheres 83.9
Pretectal area
nTPM: 90.0
1815 Male, age 53, unknown 124.8
2316 Male, age 76, right hemisphere 116.5
1817 Female, age 42, unknown 99.3
2825 Male, age 18, unknown 98.1
2273 Male, age 74, both hemispheres 94.3
2667 Female, age 75, unknown 94.0
2007 Male, age 72, unknown 88.1
2407 Male, age 75, both hemispheres 84.3
2224 Female, age 72, unknown 80.4
1944 Female, age 72, unknown 57.8
1816 Male, age 51, unknown 51.9
Red nucleus
nTPM: 170.8
1821 Female, age 72, unknown 224.7
1865 Male, age 51, unknown 214.9
1904 Male, age 53, unknown 200.0
2769 Male, age 72, unknown 187.1
1954 Female, age 42, unknown 182.6
2823 Male, age 76, right hemisphere 181.9
2227 Male, age 72, unknown 180.4
2503 Female, age 72, unknown 178.4
2785 Male, age 18, unknown 172.4
2588 Male, age 74, left hemisphere 113.0
2725 Female, age 75, unknown 112.0
2584 Male, age 75, left hemisphere 102.5
Substantia nigra
nTPM: 98.4
2409 Female, age 72, unknown 126.7
1851 Male, age 51, unknown 117.9
1889 Female, age 72, unknown 112.9
2583 Male, age 75, right hemisphere 106.9
2699 Male, age 18, unknown 103.7
2590 Female, age 75, unknown 103.2
2241 Male, age 72, unknown 90.3
1941 Male, age 53, unknown 84.2
1916 Female, age 42, unknown 81.2
2665 Male, age 74, both hemispheres 56.8
Superior colliculus
nTPM: 113.8
1995 Male, age 72, unknown 187.9
1913 Female, age 42, unknown 185.2
2587 Male, age 74, left hemisphere 126.8
1895 Male, age 76, right hemisphere 122.9
2668 Female, age 75, unknown 115.4
1839 Male, age 51, unknown 114.4
1796 Male, age 53, unknown 86.0
2087 Female, age 72, unknown 70.5
2261 Male, age 18, unknown 65.2
2664 Male, age 75, both hemispheres 63.4
Ventral tegmental area
nTPM: 115.3
2410 Female, age 72, unknown 146.8
2223 Female, age 72, unknown 135.9
1915 Female, age 42, unknown 104.2
2021 Male, age 53, unknown 103.7
1942 Male, age 51, unknown 101.1
2218 Male, age 76, both hemispheres 100.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 142.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.9
Samples: 139

Max nTPM: 404.4
Min nTPM: 60.8
Std nTPM: 65.7
Median nTPM: 122.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 404.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 350.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 326.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 323.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 311.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 291.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 289.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 287.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 281.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 253.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 252.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 725.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 725.5
FF:10158-103A5 76 years, female 725.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 213.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 213.7
Samples: 4

Max nTPM: 395.5
Min nTPM: 123.4
Sample A Female 135.5
Sample B Female 395.5
Sample C Male 123.4
Sample D Male 200.2
Midbrain
nTPM: 115.2
Samples: 4

Max nTPM: 215.3
Min nTPM: 60.1
Sample A Female 215.3
Sample B Female 110.7
Sample C Male 74.6
Sample D Male 60.1
Periaqueductal gray
nTPM: 92.2
Samples: 3

Max nTPM: 93.7
Min nTPM: 91.0
Sample B Female 91.0
Sample C Male 93.7
Sample D Male 91.9
Superior colliculi
nTPM: 98.2
Samples: 4

Max nTPM: 119.0
Min nTPM: 67.3
Sample A Female 110.7
Sample B Female 67.3
Sample C Male 95.8
Sample D Male 119.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 77.5
Min nTPM: 66.7
Sample A Male 76.6
Sample B Male 68.5
Sample C Female 66.7
Sample D Female 77.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69117356 Antisense, RP_050330_01_A02, Mouse strain C57BL/6J (56 days, male) 2.1
825 Antisense, RP_040315_01_17, Mouse strain C57BL/6J (56 days, male) 0.5
826 Antisense, RP_040315_01_17, Mouse strain C57BL/6J (56 days, male) 0.4

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