We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ALDOC
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ALDOC
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:917.7 nTPM
FANTOM5:438.1 Scaled Tags Per Million
Pig:686.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003282Antibody CAB020828
Glial cells MediumMedium
Neuronal cells Not detectedLow

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 917.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 917.7
Samples: 246

Max nTPM: 2746.2
Min nTPM: 134.3
Std nTPM: 397.4
Median nTPM: 835.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2746.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2454.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2174.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2156.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1939.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1935.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1852.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1750.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1708.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1704.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1687.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1645.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1633.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1630.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1615.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1601.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1560.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1557.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1518.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1503.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1487.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1482.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1478.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1460.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1440.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1430.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1411.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1383.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1375.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1364.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1353.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1341.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1334.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1319.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1319.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1306.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1296.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1289.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1288.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1268.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1267.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1256.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1234.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1232.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1226.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1224.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1217.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1217.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1211.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1204.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1201.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1194.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1189.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1179.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1175.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1165.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1155.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1154.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1137.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1137.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1132.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1128.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1126.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1121.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1116.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1113.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1110.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1108.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1100.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1091.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1087.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1087.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1080.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1076.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1075.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1071.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1065.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1060.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1038.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1034.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1033.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1032.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1029.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1025.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1012.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1012.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1009.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1006.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 999.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 996.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 993.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 992.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 973.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 972.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 966.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 959.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 957.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 951.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 937.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 935.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 934.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 928.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 928.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 926.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 902.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 898.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 897.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 897.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 895.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 895.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 890.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 888.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 886.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 883.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 872.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 861.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 861.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 854.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 852.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 847.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 843.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 836.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 836.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 833.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 831.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 831.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 830.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 827.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 819.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 817.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 811.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 806.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 806.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 806.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 799.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 797.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 794.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 794.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 792.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 784.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 781.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 781.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 778.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 776.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 768.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 758.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 756.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 749.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 739.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 739.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 739.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 737.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 736.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 734.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 732.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 731.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 723.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 718.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 717.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 717.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 715.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 712.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 710.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 709.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 707.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 702.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 702.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 699.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 694.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 691.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 689.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 688.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 688.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 686.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 681.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 680.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 679.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 679.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 677.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 676.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 668.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 666.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 657.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 649.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 647.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 644.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 642.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 637.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 636.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 633.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 619.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 603.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 602.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 599.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 597.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 590.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 589.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 585.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 583.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 578.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 576.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 570.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 570.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 564.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 561.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 559.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 558.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 555.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 553.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 542.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 541.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 540.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 534.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 534.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 534.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 532.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 531.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 531.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 527.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 520.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 519.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 518.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 513.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 511.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 508.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 489.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 478.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 468.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 447.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 436.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 425.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 416.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 415.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 411.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 397.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 363.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 363.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 363.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 339.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 317.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 302.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 265.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 248.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 231.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 195.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 134.3
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 438.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 438.1
FF:10164-103B2 76 years, female 438.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 686.7
Pig sample Sample description nTPM
Caudate
nTPM: 686.8
Samples: 4

Max nTPM: 867.4
Min nTPM: 514.9
Sample A Female 514.9
Sample B Female 763.6
Sample C Male 867.4
Sample D Male 601.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org