HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:20.9 nTPM
HPA Brain:52.3 nTPM
GTEx:20.9 nTPM
FANTOM5:107.8 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:52.7 nTPM
Allen mouse:11.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036382Antibody CAB012416
Glial cells MediumNot detected
Neuronal cells HighMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 52.3
Sample id Sample description nTPM
Hippocampus
nTPM: 51.4
2529 Female, age 94, left hemisphere 55.5
2621 Female, age 67, right hemisphere 53.8
2148 Female, age 91, left hemisphere 53.2
1898 Male, age 80, left hemisphere 51.7
1855 Male, age 76, left hemisphere 48.5
1911 Female, age 85, right hemisphere 45.5
Dentate gyrus
nTPM: 51.5
2531 Female, age 67, both hemispheres 58.3
2530 Female, age 94, left hemisphere 52.4
2246 Female, age 85, both hemispheres 51.0
2010 Male, age 76, both hemispheres 50.2
1927 Female, age 91, both hemispheres 50.0
2528 Male, age 74, both hemispheres 46.9
Entorhinal gyrus
nTPM: 52.3
2686 Male, age 75, right hemisphere 57.9
2764 Male, age 80, right hemisphere 55.3
2117 Female, age 91, right hemisphere 51.9
2613 Female, age 94, left hemisphere 50.5
1938 Female, age 85, left hemisphere 49.9
1787 Male, age 76, left hemisphere 48.4
Hippocampus, CA1
nTPM: 51.7
2749 Male, age 80, left hemisphere 57.6
2045 Male, age 76, both hemispheres 54.9
1873 Female, age 85, both hemispheres 51.5
2527 Male, age 74, both hemispheres 51.5
2082 Female, age 91, right hemisphere 43.1
Hippocampus, CA2
nTPM: 47.4
1963 Male, age 80, left hemisphere 53.1
2437 Female, age 94, left hemisphere 49.8
1892 Male, age 76, both hemispheres 49.1
2113 Female, age 91, right hemisphere 45.9
1940 Female, age 85, left hemisphere 45.6
2249 Male, age 74, both hemispheres 40.8
Hippocampus, CA3
nTPM: 51.9
2620 Female, age 94, left hemisphere 57.3
2861 Female, age 67, both hemispheres 54.8
2137 Male, age 80, left hemisphere 52.1
1891 Female, age 85, both hemispheres 50.1
1867 Male, age 76, both hemispheres 50.0
2436 Male, age 74, both hemispheres 47.3
Parahippocampal cortex
nTPM: 51.0
2692 Male, age 74, both hemispheres 61.4
1850 Male, age 80, both hemispheres 57.0
2532 Female, age 72, left hemisphere 54.3
2245 Female, age 91, both hemispheres 53.9
2622 Female, age 67, right hemisphere 53.1
1990 Female, age 91, right hemisphere 47.2
2018 Male, age 76, both hemispheres 47.1
1933 Female, age 85, both hemispheres 46.6
2693 Female, age 94, both hemispheres 46.3
2250 Female, age 67, right hemisphere 42.8
Perirhinal gyrus
nTPM: 50.9
1794 Male, age 80, right hemisphere 58.6
1841 Female, age 85, right hemisphere 51.6
1847 Female, age 91, left hemisphere 50.7
2848 Male, age 76, right hemisphere 48.0
2521 Female, age 94, right hemisphere 45.8
Subiculum
nTPM: 49.7
2619 Male, age 74, both hemispheres 55.6
2438 Female, age 94, left hemisphere 54.2
1901 Male, age 80, both hemispheres 49.9
2042 Male, age 76, both hemispheres 48.3
1977 Female, age 85, both hemispheres 45.7
2729 Female, age 91, right hemisphere 44.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.9
Samples: 197

Max nTPM: 33.9
Min nTPM: 11.4
Std nTPM: 3.4
Median nTPM: 20.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 33.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 29.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 29.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 28.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 28.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 28.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 27.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 27.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 27.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 27.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 26.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 107.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 107.8
FF:10169-103B7 60 years, female 116.3
FF:10153-102I9 76 years, female 99.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Subiculum
nTPM: 31.5
Samples: 4

Max nTPM: 37.7
Min nTPM: 28.3
Sample A Female 37.7
Sample B Female 29.0
Sample C Male 30.8
Sample D Male 28.3
Dorsal hippocampus
nTPM: 35.6
Samples: 4

Max nTPM: 41.5
Min nTPM: 31.6
Sample A Female 41.5
Sample B Female 37.0
Sample C Male 32.1
Sample D Male 31.6
Entorhinal cortex
nTPM: 28.5
Samples: 4

Max nTPM: 33.3
Min nTPM: 25.6
Sample A Female 33.3
Sample B Female 26.7
Sample C Male 28.4
Sample D Male 25.6
Ventral hippocampus
nTPM: 34.4
Samples: 4

Max nTPM: 40.4
Min nTPM: 25.4
Sample A Female 33.0
Sample B Female 25.4
Sample C Male 40.4
Sample D Male 38.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.6
Samples: 4

Max nTPM: 55.5
Min nTPM: 38.3
Sample A Male 41.6
Sample B Male 38.3
Sample C Female 43.0
Sample D Female 55.5
Hippocampal formation
nTPM: 52.7
Samples: 4

Max nTPM: 62.2
Min nTPM: 41.7
Sample A Male 41.7
Sample B Male 60.3
Sample C Female 62.2
Sample D Female 46.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.0
81600156 Antisense, RP_080324_01_D04, Mouse strain C57BL/6J (56 days, male) 11.2
69887469 Antisense, RP_050512_03_G05, Mouse strain C57BL/6J (56 days, male) 10.8

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