MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.4 nTPM
HPA Brain:56.7 nTPM
GTEx:21.4 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:32.0 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2586 Male, age 75, left hemisphere 66.5
2666 Male, age 74, left hemisphere 63.4
1870 Female, age 42, unknown 55.4
1833 Male, age 53, unknown 55.3
1827 Male, age 72, unknown 54.3
2828 Female, age 72, unknown 52.9
1830 Male, age 51, unknown 52.8
2019 Male, age 18, unknown 50.2
2411 Female, age 72, unknown 49.0
2219 Male, age 76, both hemispheres 47.8
Dorsal raphe nucleus
nTPM: 50.1
2047 Male, age 72, unknown 57.6
1828 Male, age 53, unknown 51.4
2016 Female, age 72, unknown 49.0
2750 Male, age 76, both hemispheres 48.9
2298 Female, age 72, unknown 43.8
Inferior colliculus
nTPM: 54.6
2849 Male, age 72, unknown 66.7
1848 Female, age 42, unknown 57.7
1890 Male, age 53, unknown 51.7
2097 Female, age 72, unknown 42.1
Median raphe nucleus
nTPM: 56.7
2220 Male, age 76, midline 56.7
Periaquaductal grey, anterior
nTPM: 50.5
1947 Male, age 18, unknown 52.2
2502 Female, age 75, unknown 50.6
1795 Male, age 51, unknown 48.8
Periaquaductal grey, dorsal
nTPM: 51.8
2850 Male, age 76, both hemispheres 55.6
1840 Male, age 53, unknown 54.0
2464 Female, age 72, unknown 49.6
1831 Male, age 72, unknown 47.9
Periaquaductal grey, lateral
nTPM: 51.4
2140 Male, age 76, both hemispheres 56.7
2053 Male, age 18, unknown 53.1
2272 Male, age 74, both hemispheres 44.5
Pretectal area
nTPM: 51.4
2825 Male, age 18, unknown 55.6
2407 Male, age 75, both hemispheres 55.0
2316 Male, age 76, right hemisphere 54.4
1817 Female, age 42, unknown 54.1
1816 Male, age 51, unknown 53.9
1944 Female, age 72, unknown 52.2
1815 Male, age 53, unknown 52.1
2667 Female, age 75, unknown 50.0
2007 Male, age 72, unknown 49.5
2224 Female, age 72, unknown 48.1
2273 Male, age 74, both hemispheres 40.7
Red nucleus
nTPM: 54.5
2588 Male, age 74, left hemisphere 61.0
1865 Male, age 51, unknown 56.9
2584 Male, age 75, left hemisphere 56.7
2503 Female, age 72, unknown 56.4
2823 Male, age 76, right hemisphere 55.6
2769 Male, age 72, unknown 55.1
2227 Male, age 72, unknown 53.8
1904 Male, age 53, unknown 52.9
2725 Female, age 75, unknown 52.0
1821 Female, age 72, unknown 51.4
1954 Female, age 42, unknown 51.2
2785 Male, age 18, unknown 50.3
Substantia nigra
nTPM: 53.4
2665 Male, age 74, both hemispheres 64.8
2699 Male, age 18, unknown 56.3
2590 Female, age 75, unknown 54.2
2583 Male, age 75, right hemisphere 54.1
2409 Female, age 72, unknown 52.8
1916 Female, age 42, unknown 52.7
1941 Male, age 53, unknown 51.7
1851 Male, age 51, unknown 51.3
1889 Female, age 72, unknown 49.9
2241 Male, age 72, unknown 46.3
Superior colliculus
nTPM: 52.7
2664 Male, age 75, both hemispheres 56.3
1839 Male, age 51, unknown 55.9
1895 Male, age 76, right hemisphere 55.4
2668 Female, age 75, unknown 55.2
2587 Male, age 74, left hemisphere 54.2
1913 Female, age 42, unknown 53.1
1796 Male, age 53, unknown 51.1
2261 Male, age 18, unknown 50.1
2087 Female, age 72, unknown 48.5
1995 Male, age 72, unknown 47.1
Ventral tegmental area
nTPM: 50.3
2223 Female, age 72, unknown 52.3
2021 Male, age 53, unknown 51.5
1915 Female, age 42, unknown 51.2
2410 Female, age 72, unknown 50.1
2218 Male, age 76, both hemispheres 49.4
1942 Male, age 51, unknown 47.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.4
Samples: 139

Max nTPM: 32.1
Min nTPM: 14.9
Std nTPM: 3.4
Median nTPM: 20.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 32.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 28.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 27.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 27.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 27.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 27.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.3
FF:10158-103A5 76 years, female 93.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.6
Samples: 4

Max nTPM: 41.3
Min nTPM: 32.8
Sample A Female 36.9
Sample B Female 32.8
Sample C Male 41.3
Sample D Male 35.4
Midbrain
nTPM: 35.5
Samples: 4

Max nTPM: 42.9
Min nTPM: 30.9
Sample A Female 42.9
Sample B Female 30.9
Sample C Male 36.1
Sample D Male 32.0
Periaqueductal gray
nTPM: 31.5
Samples: 3

Max nTPM: 35.3
Min nTPM: 29.2
Sample B Female 30.1
Sample C Male 35.3
Sample D Male 29.2
Superior colliculi
nTPM: 33.3
Samples: 4

Max nTPM: 35.4
Min nTPM: 29.6
Sample A Female 34.5
Sample B Female 29.6
Sample C Male 33.8
Sample D Male 35.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 33.9
Min nTPM: 29.2
Sample A Male 29.2
Sample B Male 32.3
Sample C Female 33.9
Sample D Female 32.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
81600156 Antisense, RP_080324_01_D04, Mouse strain C57BL/6J (56 days, male) 5.5
69887469 Antisense, RP_050512_03_G05, Mouse strain C57BL/6J (56 days, male) 4.9

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