HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:546.0 nTPM
HPA Brain:822.0 nTPM
GTEx:546.0 nTPM
FANTOM5:1746.4 Scaled Tags Per Million
Pig:585.1 nTPM
Mouse:3044.8 nTPM
Allen mouse:20.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003819Antibody CAB024907Antibody CAB080183
Glial cells Not detectedNot detectedNot detected
Neuronal cells HighHighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 822.0
Sample id Sample description nTPM
Hippocampus
nTPM: 788.7
1898 Male, age 80, left hemisphere 989.0
2529 Female, age 94, left hemisphere 814.2
2148 Female, age 91, left hemisphere 777.3
1855 Male, age 76, left hemisphere 752.3
1911 Female, age 85, right hemisphere 703.3
2621 Female, age 67, right hemisphere 696.3
Dentate gyrus
nTPM: 613.8
2528 Male, age 74, both hemispheres 771.6
1927 Female, age 91, both hemispheres 764.6
2010 Male, age 76, both hemispheres 685.4
2246 Female, age 85, both hemispheres 642.4
2530 Female, age 94, left hemisphere 446.0
2531 Female, age 67, both hemispheres 372.9
Entorhinal gyrus
nTPM: 626.0
1938 Female, age 85, left hemisphere 880.7
2117 Female, age 91, right hemisphere 807.7
1787 Male, age 76, left hemisphere 614.5
2764 Male, age 80, right hemisphere 591.1
2613 Female, age 94, left hemisphere 481.6
2686 Male, age 75, right hemisphere 380.1
Hippocampus, CA1
nTPM: 822.0
2749 Male, age 80, left hemisphere 1101.9
2527 Male, age 74, both hemispheres 1005.8
1873 Female, age 85, both hemispheres 798.9
2082 Female, age 91, right hemisphere 690.3
2045 Male, age 76, both hemispheres 513.3
Hippocampus, CA2
nTPM: 722.4
2249 Male, age 74, both hemispheres 870.7
1892 Male, age 76, both hemispheres 850.0
2113 Female, age 91, right hemisphere 778.3
1963 Male, age 80, left hemisphere 761.9
1940 Female, age 85, left hemisphere 573.6
2437 Female, age 94, left hemisphere 499.8
Hippocampus, CA3
nTPM: 719.2
2436 Male, age 74, both hemispheres 858.9
2137 Male, age 80, left hemisphere 852.2
1867 Male, age 76, both hemispheres 779.8
1891 Female, age 85, both hemispheres 745.0
2620 Female, age 94, left hemisphere 594.5
2861 Female, age 67, both hemispheres 484.5
Parahippocampal cortex
nTPM: 689.7
2250 Female, age 67, right hemisphere 949.6
1933 Female, age 85, both hemispheres 836.8
1850 Male, age 80, both hemispheres 761.2
1990 Female, age 91, right hemisphere 743.4
2692 Male, age 74, both hemispheres 740.6
2245 Female, age 91, both hemispheres 674.0
2018 Male, age 76, both hemispheres 600.8
2622 Female, age 67, right hemisphere 591.6
2693 Female, age 94, both hemispheres 525.6
2532 Female, age 72, left hemisphere 473.4
Perirhinal gyrus
nTPM: 719.2
1847 Female, age 91, left hemisphere 1034.9
1841 Female, age 85, right hemisphere 736.5
1794 Male, age 80, right hemisphere 702.9
2521 Female, age 94, right hemisphere 575.3
2848 Male, age 76, right hemisphere 546.5
Subiculum
nTPM: 724.7
2729 Female, age 91, right hemisphere 894.1
2619 Male, age 74, both hemispheres 885.4
1977 Female, age 85, both hemispheres 720.1
1901 Male, age 80, both hemispheres 690.6
2438 Female, age 94, left hemisphere 621.3
2042 Male, age 76, both hemispheres 536.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 546.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 546.0
Samples: 197

Max nTPM: 1276.7
Min nTPM: 99.4
Std nTPM: 246.8
Median nTPM: 514.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1276.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 1183.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1169.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1094.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1076.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1061.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 1058.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 1047.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1029.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1012.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 978.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1746.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1746.4
FF:10153-102I9 76 years, female 2126.1
FF:10169-103B7 60 years, female 1366.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 585.1
Pig sample Sample description nTPM
Subiculum
nTPM: 562.9
Samples: 4

Max nTPM: 697.9
Min nTPM: 443.0
Sample A Female 697.9
Sample B Female 562.8
Sample C Male 547.9
Sample D Male 443.0
Dorsal hippocampus
nTPM: 526.2
Samples: 4

Max nTPM: 693.8
Min nTPM: 371.4
Sample A Female 693.8
Sample B Female 500.4
Sample C Male 539.2
Sample D Male 371.4
Entorhinal cortex
nTPM: 436.6
Samples: 4

Max nTPM: 489.2
Min nTPM: 350.2
Sample A Female 428.3
Sample B Female 478.6
Sample C Male 489.2
Sample D Male 350.2
Ventral hippocampus
nTPM: 585.1
Samples: 4

Max nTPM: 696.4
Min nTPM: 464.3
Sample A Female 676.1
Sample B Female 464.3
Sample C Male 696.4
Sample D Male 503.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3044.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2951.4
Samples: 4

Max nTPM: 3163.0
Min nTPM: 2614.5
Sample A Male 2870.8
Sample B Male 2614.5
Sample C Female 3157.2
Sample D Female 3163.0
Hippocampal formation
nTPM: 3044.8
Samples: 4

Max nTPM: 3255.0
Min nTPM: 2935.1
Sample A Male 3255.0
Sample B Male 2944.0
Sample C Female 3045.2
Sample D Female 2935.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 20.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.8
1692 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 20.8
1691 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 14.8

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