MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1957.3 nTPM
HPA Brain:290.0 nTPM
GTEx:1957.3 nTPM
FANTOM5:29.8 Scaled Tags Per Million
Pig:559.6 nTPM
Mouse:624.6 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 290.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 258.7
2411 Female, age 72, unknown 308.7
1827 Male, age 72, unknown 303.4
2666 Male, age 74, left hemisphere 292.6
2828 Female, age 72, unknown 287.4
1870 Female, age 42, unknown 266.3
2019 Male, age 18, unknown 249.5
1833 Male, age 53, unknown 226.6
1830 Male, age 51, unknown 225.2
2586 Male, age 75, left hemisphere 217.2
2219 Male, age 76, both hemispheres 209.8
Dorsal raphe nucleus
nTPM: 255.4
2298 Female, age 72, unknown 320.0
2750 Male, age 76, both hemispheres 270.5
2016 Female, age 72, unknown 244.3
1828 Male, age 53, unknown 237.0
2047 Male, age 72, unknown 205.0
Inferior colliculus
nTPM: 248.5
2097 Female, age 72, unknown 299.0
1890 Male, age 53, unknown 265.5
1848 Female, age 42, unknown 219.9
2849 Male, age 72, unknown 209.4
Median raphe nucleus
nTPM: 243.7
2220 Male, age 76, midline 243.7
Periaquaductal grey, anterior
nTPM: 273.9
2502 Female, age 75, unknown 331.3
1947 Male, age 18, unknown 251.5
1795 Male, age 51, unknown 238.9
Periaquaductal grey, dorsal
nTPM: 245.0
1840 Male, age 53, unknown 272.5
2464 Female, age 72, unknown 250.0
1831 Male, age 72, unknown 245.4
2850 Male, age 76, both hemispheres 212.2
Periaquaductal grey, lateral
nTPM: 216.2
2053 Male, age 18, unknown 264.9
2140 Male, age 76, both hemispheres 198.0
2272 Male, age 74, both hemispheres 185.7
Pretectal area
nTPM: 266.9
1816 Male, age 51, unknown 330.0
1944 Female, age 72, unknown 325.6
1815 Male, age 53, unknown 309.5
1817 Female, age 42, unknown 301.5
2007 Male, age 72, unknown 279.2
2316 Male, age 76, right hemisphere 256.9
2224 Female, age 72, unknown 252.5
2407 Male, age 75, both hemispheres 228.7
2825 Male, age 18, unknown 226.2
2667 Female, age 75, unknown 214.9
2273 Male, age 74, both hemispheres 210.6
Red nucleus
nTPM: 260.7
2503 Female, age 72, unknown 325.9
2584 Male, age 75, left hemisphere 286.4
1865 Male, age 51, unknown 276.1
1821 Female, age 72, unknown 274.4
2588 Male, age 74, left hemisphere 267.8
2725 Female, age 75, unknown 260.6
1904 Male, age 53, unknown 254.3
2227 Male, age 72, unknown 254.2
2785 Male, age 18, unknown 252.5
2769 Male, age 72, unknown 239.7
2823 Male, age 76, right hemisphere 221.1
1954 Female, age 42, unknown 215.0
Substantia nigra
nTPM: 288.7
2409 Female, age 72, unknown 384.4
2241 Male, age 72, unknown 349.5
1851 Male, age 51, unknown 335.6
2665 Male, age 74, both hemispheres 315.6
1889 Female, age 72, unknown 300.1
1916 Female, age 42, unknown 259.6
2590 Female, age 75, unknown 259.4
2699 Male, age 18, unknown 246.4
1941 Male, age 53, unknown 240.5
2583 Male, age 75, right hemisphere 195.9
Superior colliculus
nTPM: 290.0
2261 Male, age 18, unknown 352.0
2587 Male, age 74, left hemisphere 330.1
1913 Female, age 42, unknown 312.8
2668 Female, age 75, unknown 312.7
2087 Female, age 72, unknown 299.2
1995 Male, age 72, unknown 293.9
1796 Male, age 53, unknown 291.1
1895 Male, age 76, right hemisphere 260.6
1839 Male, age 51, unknown 235.5
2664 Male, age 75, both hemispheres 211.7
Ventral tegmental area
nTPM: 265.7
2410 Female, age 72, unknown 290.2
1915 Female, age 42, unknown 285.9
2223 Female, age 72, unknown 269.3
2021 Male, age 53, unknown 266.5
1942 Male, age 51, unknown 263.2
2218 Male, age 76, both hemispheres 219.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1957.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1957.3
Samples: 139

Max nTPM: 7841.7
Min nTPM: 735.1
Std nTPM: 929.9
Median nTPM: 1703.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 7841.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5842.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4685.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 4208.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4140.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3472.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3471.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3396.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3297.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 3259.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 3211.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.8
FF:10158-103A5 76 years, female 29.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 559.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 559.6
Samples: 4

Max nTPM: 775.7
Min nTPM: 413.6
Sample A Female 775.7
Sample B Female 593.0
Sample C Male 456.0
Sample D Male 413.6
Midbrain
nTPM: 541.2
Samples: 4

Max nTPM: 732.3
Min nTPM: 377.8
Sample A Female 732.3
Sample B Female 614.7
Sample C Male 440.1
Sample D Male 377.8
Periaqueductal gray
nTPM: 436.9
Samples: 3

Max nTPM: 466.1
Min nTPM: 401.1
Sample B Female 466.1
Sample C Male 443.5
Sample D Male 401.1
Superior colliculi
nTPM: 554.4
Samples: 4

Max nTPM: 669.5
Min nTPM: 481.3
Sample A Female 669.5
Sample B Female 532.2
Sample C Male 534.6
Sample D Male 481.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 624.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 624.6
Samples: 4

Max nTPM: 673.9
Min nTPM: 591.7
Sample A Male 673.9
Sample B Male 609.4
Sample C Female 591.7
Sample D Female 623.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
68744869 Antisense, RP_050208_01_G10, Mouse strain C57BL/6J (56 days, male) 4.7

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