MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.4 nTPM
HPA Brain:47.4 nTPM
GTEx:24.4 nTPM
FANTOM5:45.8 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:16.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.1
2586 Male, age 75, left hemisphere 67.9
2411 Female, age 72, unknown 50.1
1870 Female, age 42, unknown 48.8
1833 Male, age 53, unknown 46.6
2828 Female, age 72, unknown 46.3
2219 Male, age 76, both hemispheres 46.2
1827 Male, age 72, unknown 45.6
2019 Male, age 18, unknown 44.0
1830 Male, age 51, unknown 42.4
2666 Male, age 74, left hemisphere 33.2
Dorsal raphe nucleus
nTPM: 46.4
2298 Female, age 72, unknown 49.9
1828 Male, age 53, unknown 47.1
2047 Male, age 72, unknown 45.9
2750 Male, age 76, both hemispheres 45.0
2016 Female, age 72, unknown 43.9
Inferior colliculus
nTPM: 38.9
1848 Female, age 42, unknown 43.2
2849 Male, age 72, unknown 39.5
1890 Male, age 53, unknown 37.9
2097 Female, age 72, unknown 35.0
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 44.7
2502 Female, age 75, unknown 46.8
1795 Male, age 51, unknown 45.6
1947 Male, age 18, unknown 41.6
Periaquaductal grey, dorsal
nTPM: 40.7
2850 Male, age 76, both hemispheres 42.9
1831 Male, age 72, unknown 41.1
2464 Female, age 72, unknown 40.9
1840 Male, age 53, unknown 38.0
Periaquaductal grey, lateral
nTPM: 44.2
2053 Male, age 18, unknown 45.2
2140 Male, age 76, both hemispheres 44.5
2272 Male, age 74, both hemispheres 42.9
Pretectal area
nTPM: 42.8
2667 Female, age 75, unknown 61.4
1944 Female, age 72, unknown 45.7
2224 Female, age 72, unknown 45.5
2273 Male, age 74, both hemispheres 44.1
2316 Male, age 76, right hemisphere 44.0
2825 Male, age 18, unknown 43.3
1817 Female, age 42, unknown 40.4
1816 Male, age 51, unknown 38.8
2007 Male, age 72, unknown 37.7
1815 Male, age 53, unknown 35.5
2407 Male, age 75, both hemispheres 34.6
Red nucleus
nTPM: 43.5
2584 Male, age 75, left hemisphere 52.1
2769 Male, age 72, unknown 51.8
1904 Male, age 53, unknown 47.1
1865 Male, age 51, unknown 46.5
2227 Male, age 72, unknown 45.7
2785 Male, age 18, unknown 43.5
1821 Female, age 72, unknown 43.1
1954 Female, age 42, unknown 41.7
2588 Male, age 74, left hemisphere 39.0
2503 Female, age 72, unknown 38.7
2725 Female, age 75, unknown 36.7
2823 Male, age 76, right hemisphere 36.5
Substantia nigra
nTPM: 44.7
2583 Male, age 75, right hemisphere 57.2
1916 Female, age 42, unknown 50.3
1851 Male, age 51, unknown 47.3
2665 Male, age 74, both hemispheres 47.0
2699 Male, age 18, unknown 45.9
1941 Male, age 53, unknown 45.7
2590 Female, age 75, unknown 40.5
1889 Female, age 72, unknown 39.9
2409 Female, age 72, unknown 36.7
2241 Male, age 72, unknown 36.6
Superior colliculus
nTPM: 41.4
1839 Male, age 51, unknown 45.3
1995 Male, age 72, unknown 44.3
1796 Male, age 53, unknown 43.2
2261 Male, age 18, unknown 42.9
2664 Male, age 75, both hemispheres 42.2
1913 Female, age 42, unknown 41.6
2587 Male, age 74, left hemisphere 41.3
2087 Female, age 72, unknown 41.0
1895 Male, age 76, right hemisphere 37.2
2668 Female, age 75, unknown 34.9
Ventral tegmental area
nTPM: 47.4
2021 Male, age 53, unknown 51.4
2223 Female, age 72, unknown 51.2
1915 Female, age 42, unknown 51.0
2410 Female, age 72, unknown 45.0
1942 Male, age 51, unknown 43.7
2218 Male, age 76, both hemispheres 42.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.4
Samples: 139

Max nTPM: 53.0
Min nTPM: 11.2
Std nTPM: 7.4
Median nTPM: 23.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 53.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 48.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 45.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 44.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 43.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 43.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 40.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 37.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 37.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 36.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.8
FF:10158-103A5 76 years, female 45.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 36.5
Min nTPM: 28.0
Sample A Female 36.5
Sample B Female 28.0
Sample C Male 28.9
Sample D Male 34.3
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 40.6
Min nTPM: 23.9
Sample A Female 40.6
Sample B Female 26.2
Sample C Male 28.3
Sample D Male 23.9
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 24.1
Min nTPM: 19.6
Sample B Female 24.1
Sample C Male 20.0
Sample D Male 19.6
Superior colliculi
nTPM: 40.9
Samples: 4

Max nTPM: 55.7
Min nTPM: 30.9
Sample A Female 44.9
Sample B Female 55.7
Sample C Male 30.9
Sample D Male 32.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.9
Sample A Male 17.2
Sample B Male 14.9
Sample C Female 16.0
Sample D Female 16.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69671929 Antisense, RP_050428_02_F06, Mouse strain C57BL/6J (56 days, male) 0.5

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