MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:14.9 nTPM
GTEx:6.0 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:25.2 nTPM
Mouse:6.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.4
1827 Male, age 72, unknown 12.7
2019 Male, age 18, unknown 11.7
2219 Male, age 76, both hemispheres 11.4
2828 Female, age 72, unknown 9.6
1833 Male, age 53, unknown 9.2
1830 Male, age 51, unknown 7.9
2411 Female, age 72, unknown 7.9
2586 Male, age 75, left hemisphere 7.9
1870 Female, age 42, unknown 7.7
2666 Male, age 74, left hemisphere 7.5
Dorsal raphe nucleus
nTPM: 11.3
2298 Female, age 72, unknown 14.5
2016 Female, age 72, unknown 12.7
1828 Male, age 53, unknown 11.8
2047 Male, age 72, unknown 10.2
2750 Male, age 76, both hemispheres 7.4
Inferior colliculus
nTPM: 9.1
1848 Female, age 42, unknown 9.8
2097 Female, age 72, unknown 9.4
1890 Male, age 53, unknown 8.6
2849 Male, age 72, unknown 8.5
Median raphe nucleus
nTPM: 9.8
2220 Male, age 76, midline 9.8
Periaquaductal grey, anterior
nTPM: 11.5
1947 Male, age 18, unknown 11.8
1795 Male, age 51, unknown 11.7
2502 Female, age 75, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 12.9
2850 Male, age 76, both hemispheres 16.8
1840 Male, age 53, unknown 12.9
1831 Male, age 72, unknown 11.6
2464 Female, age 72, unknown 10.3
Periaquaductal grey, lateral
nTPM: 14.9
2272 Male, age 74, both hemispheres 20.7
2140 Male, age 76, both hemispheres 13.5
2053 Male, age 18, unknown 10.5
Pretectal area
nTPM: 12.6
2273 Male, age 74, both hemispheres 21.5
1816 Male, age 51, unknown 16.1
1944 Female, age 72, unknown 14.9
2667 Female, age 75, unknown 12.7
1815 Male, age 53, unknown 12.3
2007 Male, age 72, unknown 12.1
2224 Female, age 72, unknown 11.1
1817 Female, age 42, unknown 10.5
2407 Male, age 75, both hemispheres 9.3
2316 Male, age 76, right hemisphere 9.1
2825 Male, age 18, unknown 8.7
Red nucleus
nTPM: 7.9
2725 Female, age 75, unknown 10.0
2785 Male, age 18, unknown 9.9
2588 Male, age 74, left hemisphere 8.4
2823 Male, age 76, right hemisphere 8.2
2503 Female, age 72, unknown 8.0
1904 Male, age 53, unknown 7.9
2584 Male, age 75, left hemisphere 7.9
1821 Female, age 72, unknown 7.6
1865 Male, age 51, unknown 7.4
1954 Female, age 42, unknown 6.8
2227 Male, age 72, unknown 6.7
2769 Male, age 72, unknown 6.4
Substantia nigra
nTPM: 11.5
2241 Male, age 72, unknown 14.6
1916 Female, age 42, unknown 14.3
2409 Female, age 72, unknown 12.8
1851 Male, age 51, unknown 12.7
2699 Male, age 18, unknown 11.2
1889 Female, age 72, unknown 10.8
2665 Male, age 74, both hemispheres 10.5
2590 Female, age 75, unknown 10.3
1941 Male, age 53, unknown 9.9
2583 Male, age 75, right hemisphere 8.0
Superior colliculus
nTPM: 11.2
1796 Male, age 53, unknown 13.5
2087 Female, age 72, unknown 13.2
2261 Male, age 18, unknown 13.2
1995 Male, age 72, unknown 11.3
1895 Male, age 76, right hemisphere 11.2
2587 Male, age 74, left hemisphere 10.7
2664 Male, age 75, both hemispheres 10.5
1913 Female, age 42, unknown 10.4
2668 Female, age 75, unknown 9.8
1839 Male, age 51, unknown 8.6
Ventral tegmental area
nTPM: 9.9
2410 Female, age 72, unknown 11.0
1915 Female, age 42, unknown 10.4
1942 Male, age 51, unknown 10.2
2218 Male, age 76, both hemispheres 9.9
2021 Male, age 53, unknown 8.9
2223 Female, age 72, unknown 8.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.0
Samples: 139

Max nTPM: 37.0
Min nTPM: 1.8
Std nTPM: 3.5
Median nTPM: 5.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 37.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 14.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 12.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 12.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 12.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 10.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 10.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 10.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 10.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 9.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 15.6
Min nTPM: 9.8
Sample A Female 13.1
Sample B Female 12.9
Sample C Male 15.6
Sample D Male 9.8
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 17.9
Sample C Male 18.3
Sample D Male 17.7
Periaqueductal gray
nTPM: 25.2
Samples: 3

Max nTPM: 29.3
Min nTPM: 22.3
Sample B Female 22.3
Sample C Male 24.1
Sample D Male 29.3
Superior colliculi
nTPM: 17.1
Samples: 4

Max nTPM: 20.3
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 16.6
Sample C Male 20.3
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.9
Sample A Male 5.9
Sample B Male 6.2
Sample C Female 6.0
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69526492 Antisense, RP_050419_04_H12, Mouse strain C57BL/6J (56 days, male) 0.5

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