MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:104.9 nTPM
GTEx:21.1 nTPM
FANTOM5:138.2 Scaled Tags Per Million
Pig:137.5 nTPM
Mouse:49.3 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.2
2586 Male, age 75, left hemisphere 113.6
1870 Female, age 42, unknown 100.0
2219 Male, age 76, both hemispheres 98.5
1827 Male, age 72, unknown 97.4
2411 Female, age 72, unknown 94.7
2019 Male, age 18, unknown 92.2
1833 Male, age 53, unknown 88.1
1830 Male, age 51, unknown 87.0
2828 Female, age 72, unknown 80.2
2666 Male, age 74, left hemisphere 69.8
Dorsal raphe nucleus
nTPM: 94.4
2298 Female, age 72, unknown 102.3
2016 Female, age 72, unknown 97.3
1828 Male, age 53, unknown 92.3
2047 Male, age 72, unknown 92.1
2750 Male, age 76, both hemispheres 88.1
Inferior colliculus
nTPM: 102.9
2097 Female, age 72, unknown 107.8
2849 Male, age 72, unknown 106.3
1848 Female, age 42, unknown 102.8
1890 Male, age 53, unknown 94.8
Median raphe nucleus
nTPM: 85.4
2220 Male, age 76, midline 85.4
Periaquaductal grey, anterior
nTPM: 103.5
1947 Male, age 18, unknown 111.2
2502 Female, age 75, unknown 101.2
1795 Male, age 51, unknown 98.1
Periaquaductal grey, dorsal
nTPM: 98.6
1840 Male, age 53, unknown 120.1
1831 Male, age 72, unknown 92.6
2464 Female, age 72, unknown 91.6
2850 Male, age 76, both hemispheres 89.9
Periaquaductal grey, lateral
nTPM: 87.0
2053 Male, age 18, unknown 94.7
2272 Male, age 74, both hemispheres 86.6
2140 Male, age 76, both hemispheres 79.7
Pretectal area
nTPM: 103.5
1817 Female, age 42, unknown 112.5
1816 Male, age 51, unknown 109.6
2273 Male, age 74, both hemispheres 108.1
2224 Female, age 72, unknown 106.5
1815 Male, age 53, unknown 106.2
2007 Male, age 72, unknown 104.7
2407 Male, age 75, both hemispheres 103.4
2667 Female, age 75, unknown 100.3
2825 Male, age 18, unknown 99.1
1944 Female, age 72, unknown 98.8
2316 Male, age 76, right hemisphere 89.1
Red nucleus
nTPM: 86.8
1821 Female, age 72, unknown 104.1
2503 Female, age 72, unknown 94.9
1865 Male, age 51, unknown 94.6
2785 Male, age 18, unknown 86.1
1904 Male, age 53, unknown 85.0
2725 Female, age 75, unknown 84.6
2227 Male, age 72, unknown 83.6
2769 Male, age 72, unknown 83.3
2584 Male, age 75, left hemisphere 83.1
1954 Female, age 42, unknown 83.0
2823 Male, age 76, right hemisphere 81.9
2588 Male, age 74, left hemisphere 77.6
Substantia nigra
nTPM: 104.9
2241 Male, age 72, unknown 118.5
2409 Female, age 72, unknown 109.7
2665 Male, age 74, both hemispheres 109.7
1851 Male, age 51, unknown 104.8
2590 Female, age 75, unknown 104.1
1916 Female, age 42, unknown 103.4
2583 Male, age 75, right hemisphere 102.2
1889 Female, age 72, unknown 101.8
1941 Male, age 53, unknown 99.8
2699 Male, age 18, unknown 95.0
Superior colliculus
nTPM: 98.7
2664 Male, age 75, both hemispheres 114.7
2668 Female, age 75, unknown 106.6
2587 Male, age 74, left hemisphere 99.5
1839 Male, age 51, unknown 98.7
1895 Male, age 76, right hemisphere 97.1
1796 Male, age 53, unknown 96.9
2261 Male, age 18, unknown 96.1
2087 Female, age 72, unknown 94.7
1913 Female, age 42, unknown 91.5
1995 Male, age 72, unknown 90.6
Ventral tegmental area
nTPM: 96.1
2410 Female, age 72, unknown 103.5
2223 Female, age 72, unknown 101.9
2021 Male, age 53, unknown 94.8
1915 Female, age 42, unknown 93.3
2218 Male, age 76, both hemispheres 91.8
1942 Male, age 51, unknown 91.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 139

Max nTPM: 30.5
Min nTPM: 15.1
Std nTPM: 3.1
Median nTPM: 20.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 30.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 29.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 28.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 27.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 27.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 27.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 26.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 25.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.2
FF:10158-103A5 76 years, female 138.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 137.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 121.6
Samples: 4

Max nTPM: 146.2
Min nTPM: 99.3
Sample A Female 146.2
Sample B Female 120.6
Sample C Male 120.2
Sample D Male 99.3
Midbrain
nTPM: 137.5
Samples: 4

Max nTPM: 149.8
Min nTPM: 131.4
Sample A Female 149.8
Sample B Female 136.0
Sample C Male 132.7
Sample D Male 131.4
Periaqueductal gray
nTPM: 124.5
Samples: 3

Max nTPM: 133.5
Min nTPM: 115.4
Sample B Female 124.6
Sample C Male 133.5
Sample D Male 115.4
Superior colliculi
nTPM: 120.0
Samples: 4

Max nTPM: 131.2
Min nTPM: 98.4
Sample A Female 131.2
Sample B Female 98.4
Sample C Male 121.9
Sample D Male 128.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.3
Samples: 4

Max nTPM: 52.3
Min nTPM: 45.3
Sample A Male 45.3
Sample B Male 52.3
Sample C Female 51.0
Sample D Female 48.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
70445688 Antisense, RP_050614_04_D04, Mouse strain C57BL/6J (56 days, male) 9.4

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