MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.2 nTPM
HPA Brain:732.5 nTPM
GTEx:76.2 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:329.3 nTPM
Mouse:255.2 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 732.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 428.2
2586 Male, age 75, left hemisphere 824.9
2828 Female, age 72, unknown 465.8
1827 Male, age 72, unknown 446.6
2219 Male, age 76, both hemispheres 412.1
1833 Male, age 53, unknown 406.6
2019 Male, age 18, unknown 368.1
2666 Male, age 74, left hemisphere 353.2
1830 Male, age 51, unknown 343.9
1870 Female, age 42, unknown 341.4
2411 Female, age 72, unknown 319.2
Dorsal raphe nucleus
nTPM: 459.0
2047 Male, age 72, unknown 569.5
1828 Male, age 53, unknown 547.2
2016 Female, age 72, unknown 429.5
2298 Female, age 72, unknown 412.2
2750 Male, age 76, both hemispheres 336.6
Inferior colliculus
nTPM: 732.5
1848 Female, age 42, unknown 897.5
2097 Female, age 72, unknown 704.5
1890 Male, age 53, unknown 664.1
2849 Male, age 72, unknown 663.9
Median raphe nucleus
nTPM: 306.8
2220 Male, age 76, midline 306.8
Periaquaductal grey, anterior
nTPM: 472.7
2502 Female, age 75, unknown 577.7
1947 Male, age 18, unknown 449.9
1795 Male, age 51, unknown 390.4
Periaquaductal grey, dorsal
nTPM: 480.3
1840 Male, age 53, unknown 615.8
2464 Female, age 72, unknown 610.3
2850 Male, age 76, both hemispheres 429.8
1831 Male, age 72, unknown 265.2
Periaquaductal grey, lateral
nTPM: 367.5
2140 Male, age 76, both hemispheres 477.3
2053 Male, age 18, unknown 421.8
2272 Male, age 74, both hemispheres 203.3
Pretectal area
nTPM: 439.4
1817 Female, age 42, unknown 660.9
1816 Male, age 51, unknown 534.3
2007 Male, age 72, unknown 500.8
1944 Female, age 72, unknown 458.3
2667 Female, age 75, unknown 455.2
2825 Male, age 18, unknown 450.1
1815 Male, age 53, unknown 440.3
2316 Male, age 76, right hemisphere 414.6
2224 Female, age 72, unknown 394.2
2407 Male, age 75, both hemispheres 296.1
2273 Male, age 74, both hemispheres 228.8
Red nucleus
nTPM: 494.3
1821 Female, age 72, unknown 645.6
1954 Female, age 42, unknown 630.9
2769 Male, age 72, unknown 630.5
2227 Male, age 72, unknown 606.3
2588 Male, age 74, left hemisphere 599.2
2503 Female, age 72, unknown 508.0
1865 Male, age 51, unknown 488.4
2823 Male, age 76, right hemisphere 483.2
1904 Male, age 53, unknown 475.8
2785 Male, age 18, unknown 324.5
2725 Female, age 75, unknown 309.4
2584 Male, age 75, left hemisphere 230.1
Substantia nigra
nTPM: 408.3
1916 Female, age 42, unknown 618.7
1889 Female, age 72, unknown 564.4
2699 Male, age 18, unknown 455.8
2241 Male, age 72, unknown 437.0
1851 Male, age 51, unknown 394.5
2665 Male, age 74, both hemispheres 381.2
1941 Male, age 53, unknown 329.9
2583 Male, age 75, right hemisphere 308.2
2409 Female, age 72, unknown 301.4
2590 Female, age 75, unknown 292.1
Superior colliculus
nTPM: 444.7
2668 Female, age 75, unknown 664.9
1895 Male, age 76, right hemisphere 535.8
2087 Female, age 72, unknown 499.3
2664 Male, age 75, both hemispheres 498.9
1839 Male, age 51, unknown 485.6
2261 Male, age 18, unknown 482.7
1796 Male, age 53, unknown 419.0
2587 Male, age 74, left hemisphere 328.4
1913 Female, age 42, unknown 271.0
1995 Male, age 72, unknown 261.9
Ventral tegmental area
nTPM: 346.4
2410 Female, age 72, unknown 408.0
1915 Female, age 42, unknown 388.3
2223 Female, age 72, unknown 368.8
1942 Male, age 51, unknown 332.8
2218 Male, age 76, both hemispheres 309.6
2021 Male, age 53, unknown 270.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.2
Samples: 139

Max nTPM: 249.5
Min nTPM: 5.4
Std nTPM: 53.4
Median nTPM: 62.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 249.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 234.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 230.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 229.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 225.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 193.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 192.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 180.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 179.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 175.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 173.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.0
FF:10158-103A5 76 years, female 65.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 329.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 253.0
Samples: 4

Max nTPM: 275.8
Min nTPM: 207.5
Sample A Female 265.7
Sample B Female 207.5
Sample C Male 275.8
Sample D Male 262.9
Midbrain
nTPM: 329.3
Samples: 4

Max nTPM: 504.4
Min nTPM: 125.3
Sample A Female 125.3
Sample B Female 399.9
Sample C Male 504.4
Sample D Male 287.5
Periaqueductal gray
nTPM: 300.6
Samples: 3

Max nTPM: 421.3
Min nTPM: 222.6
Sample B Female 421.3
Sample C Male 257.9
Sample D Male 222.6
Superior colliculi
nTPM: 302.4
Samples: 4

Max nTPM: 403.7
Min nTPM: 193.0
Sample A Female 287.0
Sample B Female 193.0
Sample C Male 403.7
Sample D Male 325.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 255.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 255.2
Samples: 4

Max nTPM: 265.0
Min nTPM: 233.4
Sample A Male 233.4
Sample B Male 265.0
Sample C Female 259.2
Sample D Female 263.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
73521823 Antisense, RP_051101_03_B07, Mouse strain C57BL/6J (56 days, male) 8.8
69873839 Antisense, RP_050512_02_B03, Mouse strain C57BL/6J (56 days, male) 7.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org