MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.9 nTPM
HPA Brain:28.4 nTPM
GTEx:21.9 nTPM
FANTOM5:40.8 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:27.9 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.9
2411 Female, age 72, unknown 31.7
2019 Male, age 18, unknown 31.4
1870 Female, age 42, unknown 29.8
1830 Male, age 51, unknown 28.6
1833 Male, age 53, unknown 27.5
2219 Male, age 76, both hemispheres 26.9
1827 Male, age 72, unknown 26.0
2828 Female, age 72, unknown 25.8
2586 Male, age 75, left hemisphere 21.2
2666 Male, age 74, left hemisphere 20.0
Dorsal raphe nucleus
nTPM: 26.4
2750 Male, age 76, both hemispheres 28.6
2047 Male, age 72, unknown 28.5
2016 Female, age 72, unknown 27.2
1828 Male, age 53, unknown 25.2
2298 Female, age 72, unknown 22.7
Inferior colliculus
nTPM: 25.3
1848 Female, age 42, unknown 26.1
2097 Female, age 72, unknown 25.8
1890 Male, age 53, unknown 24.9
2849 Male, age 72, unknown 24.3
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Periaquaductal grey, anterior
nTPM: 25.2
1947 Male, age 18, unknown 29.3
1795 Male, age 51, unknown 23.4
2502 Female, age 75, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 24.9
2464 Female, age 72, unknown 27.2
2850 Male, age 76, both hemispheres 25.4
1831 Male, age 72, unknown 24.0
1840 Male, age 53, unknown 22.8
Periaquaductal grey, lateral
nTPM: 26.5
2272 Male, age 74, both hemispheres 29.1
2140 Male, age 76, both hemispheres 25.3
2053 Male, age 18, unknown 25.0
Pretectal area
nTPM: 26.4
2316 Male, age 76, right hemisphere 30.4
2667 Female, age 75, unknown 28.2
1815 Male, age 53, unknown 27.7
1817 Female, age 42, unknown 27.5
2273 Male, age 74, both hemispheres 27.3
2007 Male, age 72, unknown 26.5
2407 Male, age 75, both hemispheres 25.7
2224 Female, age 72, unknown 25.5
1944 Female, age 72, unknown 24.5
2825 Male, age 18, unknown 24.0
1816 Male, age 51, unknown 23.4
Red nucleus
nTPM: 28.4
2823 Male, age 76, right hemisphere 33.9
1865 Male, age 51, unknown 32.1
1904 Male, age 53, unknown 31.5
1821 Female, age 72, unknown 28.6
2227 Male, age 72, unknown 28.6
2725 Female, age 75, unknown 27.5
2769 Male, age 72, unknown 27.5
1954 Female, age 42, unknown 27.3
2785 Male, age 18, unknown 27.1
2503 Female, age 72, unknown 26.8
2588 Male, age 74, left hemisphere 26.4
2584 Male, age 75, left hemisphere 23.3
Substantia nigra
nTPM: 26.3
2590 Female, age 75, unknown 28.6
1851 Male, age 51, unknown 28.2
1941 Male, age 53, unknown 27.9
1916 Female, age 42, unknown 27.6
2699 Male, age 18, unknown 25.7
2583 Male, age 75, right hemisphere 25.6
1889 Female, age 72, unknown 25.4
2409 Female, age 72, unknown 25.4
2241 Male, age 72, unknown 25.2
2665 Male, age 74, both hemispheres 23.2
Superior colliculus
nTPM: 25.6
1895 Male, age 76, right hemisphere 29.9
1913 Female, age 42, unknown 29.5
1995 Male, age 72, unknown 27.2
2087 Female, age 72, unknown 26.2
2587 Male, age 74, left hemisphere 25.2
2668 Female, age 75, unknown 24.5
1839 Male, age 51, unknown 24.2
1796 Male, age 53, unknown 23.8
2261 Male, age 18, unknown 22.7
2664 Male, age 75, both hemispheres 22.3
Ventral tegmental area
nTPM: 26.2
2410 Female, age 72, unknown 28.5
2223 Female, age 72, unknown 26.5
1915 Female, age 42, unknown 26.0
2218 Male, age 76, both hemispheres 25.9
1942 Male, age 51, unknown 25.3
2021 Male, age 53, unknown 25.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.9
Samples: 139

Max nTPM: 33.6
Min nTPM: 15.6
Std nTPM: 3.0
Median nTPM: 21.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 32.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 30.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 28.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 28.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 28.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 27.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 27.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 27.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.8
FF:10158-103A5 76 years, female 40.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 19.1
Min nTPM: 14.9
Sample A Female 16.2
Sample B Female 14.9
Sample C Male 19.1
Sample D Male 17.2
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 21.0
Min nTPM: 15.3
Sample A Female 21.0
Sample B Female 15.3
Sample C Male 19.2
Sample D Male 17.1
Periaqueductal gray
nTPM: 15.5
Samples: 3

Max nTPM: 18.2
Min nTPM: 13.3
Sample B Female 13.3
Sample C Male 18.2
Sample D Male 15.0
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 14.4
Sample A Female 16.4
Sample B Female 14.4
Sample C Male 21.5
Sample D Male 18.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.9
Samples: 4

Max nTPM: 31.3
Min nTPM: 25.1
Sample A Male 27.1
Sample B Male 28.1
Sample C Female 25.1
Sample D Female 31.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
72727 Antisense, RP_040407_01_A09, Mouse strain C57BL/6J (56 days, male) 3.6

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