MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1331.1 nTPM
HPA Brain:592.1 nTPM
GTEx:1331.1 nTPM
FANTOM5:533.2 Scaled Tags Per Million
Pig:125.5 nTPM
Mouse:356.9 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 592.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 474.4
2411 Female, age 72, unknown 597.0
2019 Male, age 18, unknown 531.9
1870 Female, age 42, unknown 510.8
1827 Male, age 72, unknown 490.1
1833 Male, age 53, unknown 465.4
2219 Male, age 76, both hemispheres 449.0
2586 Male, age 75, left hemisphere 433.9
2828 Female, age 72, unknown 429.2
1830 Male, age 51, unknown 419.3
2666 Male, age 74, left hemisphere 417.0
Dorsal raphe nucleus
nTPM: 476.0
1828 Male, age 53, unknown 530.4
2298 Female, age 72, unknown 504.7
2750 Male, age 76, both hemispheres 500.9
2047 Male, age 72, unknown 448.7
2016 Female, age 72, unknown 395.3
Inferior colliculus
nTPM: 502.4
2097 Female, age 72, unknown 607.3
1890 Male, age 53, unknown 558.8
1848 Female, age 42, unknown 460.6
2849 Male, age 72, unknown 383.0
Median raphe nucleus
nTPM: 455.8
2220 Male, age 76, midline 455.8
Periaquaductal grey, anterior
nTPM: 450.7
1947 Male, age 18, unknown 469.1
1795 Male, age 51, unknown 462.8
2502 Female, age 75, unknown 420.4
Periaquaductal grey, dorsal
nTPM: 357.7
2464 Female, age 72, unknown 376.2
1831 Male, age 72, unknown 366.3
1840 Male, age 53, unknown 352.4
2850 Male, age 76, both hemispheres 336.0
Periaquaductal grey, lateral
nTPM: 358.7
2272 Male, age 74, both hemispheres 401.4
2053 Male, age 18, unknown 367.0
2140 Male, age 76, both hemispheres 307.9
Pretectal area
nTPM: 458.2
2007 Male, age 72, unknown 643.4
1817 Female, age 42, unknown 606.3
1816 Male, age 51, unknown 522.6
1944 Female, age 72, unknown 519.8
1815 Male, age 53, unknown 471.0
2224 Female, age 72, unknown 429.6
2667 Female, age 75, unknown 422.7
2273 Male, age 74, both hemispheres 398.7
2825 Male, age 18, unknown 389.4
2316 Male, age 76, right hemisphere 384.6
2407 Male, age 75, both hemispheres 252.4
Red nucleus
nTPM: 592.1
2588 Male, age 74, left hemisphere 806.9
2725 Female, age 75, unknown 711.0
2503 Female, age 72, unknown 701.4
1821 Female, age 72, unknown 698.5
2227 Male, age 72, unknown 604.1
2769 Male, age 72, unknown 581.3
2785 Male, age 18, unknown 539.8
1865 Male, age 51, unknown 536.1
1954 Female, age 42, unknown 528.9
2823 Male, age 76, right hemisphere 514.6
1904 Male, age 53, unknown 501.9
2584 Male, age 75, left hemisphere 381.2
Substantia nigra
nTPM: 566.3
1916 Female, age 42, unknown 769.0
1851 Male, age 51, unknown 659.3
1889 Female, age 72, unknown 605.5
2665 Male, age 74, both hemispheres 592.2
1941 Male, age 53, unknown 585.5
2241 Male, age 72, unknown 543.5
2699 Male, age 18, unknown 541.6
2409 Female, age 72, unknown 523.8
2590 Female, age 75, unknown 446.1
2583 Male, age 75, right hemisphere 396.9
Superior colliculus
nTPM: 410.0
2587 Male, age 74, left hemisphere 477.6
1796 Male, age 53, unknown 467.3
2668 Female, age 75, unknown 464.9
2087 Female, age 72, unknown 463.7
2261 Male, age 18, unknown 422.5
1895 Male, age 76, right hemisphere 417.9
1839 Male, age 51, unknown 405.4
1913 Female, age 42, unknown 386.8
1995 Male, age 72, unknown 352.2
2664 Male, age 75, both hemispheres 241.5
Ventral tegmental area
nTPM: 545.3
2223 Female, age 72, unknown 637.3
2410 Female, age 72, unknown 614.1
1915 Female, age 42, unknown 590.2
2218 Male, age 76, both hemispheres 581.4
1942 Male, age 51, unknown 456.5
2021 Male, age 53, unknown 392.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1331.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1331.1
Samples: 139

Max nTPM: 3889.9
Min nTPM: 547.0
Std nTPM: 468.2
Median nTPM: 1296.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3889.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2819.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 2654.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2526.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2509.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 2400.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2234.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 2184.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 2139.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2061.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 2034.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 533.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 533.2
FF:10158-103A5 76 years, female 533.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 125.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.1
Samples: 4

Max nTPM: 148.8
Min nTPM: 77.7
Sample A Female 148.8
Sample B Female 84.2
Sample C Male 109.5
Sample D Male 77.7
Midbrain
nTPM: 111.5
Samples: 4

Max nTPM: 126.4
Min nTPM: 101.5
Sample A Female 115.2
Sample B Female 101.5
Sample C Male 126.4
Sample D Male 102.8
Periaqueductal gray
nTPM: 86.7
Samples: 3

Max nTPM: 104.7
Min nTPM: 75.9
Sample B Female 79.6
Sample C Male 104.7
Sample D Male 75.9
Superior colliculi
nTPM: 125.5
Samples: 4

Max nTPM: 148.2
Min nTPM: 102.2
Sample A Female 145.7
Sample B Female 102.2
Sample C Male 148.2
Sample D Male 105.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 356.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 356.9
Samples: 4

Max nTPM: 415.7
Min nTPM: 310.8
Sample A Male 415.7
Sample B Male 334.8
Sample C Female 310.8
Sample D Female 366.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
69080022 Antisense, RP_050324_01_D12, Mouse strain C57BL/6J (56 days, male) 5.5

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