BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:25.5 nTPM
HPA Brain:50.8 nTPM
GTEx:25.5 nTPM
FANTOM5:93.0 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:59.6 nTPM
Allen mouse:2.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038308Antibody HPA038696
Glial cells MediumHigh
Neuronal cells MediumHigh



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.2
2288 Male, age 75, left hemisphere 49.1
2846 Female, age 79, unknown 49.1
1857 Female, age 85, left hemisphere 48.0
1781 Male, age 74, unknown 45.9
1854 Male, age 80, left hemisphere 43.5
2290 Female, age 72, unknown 42.9
2481 Female, age 94, left hemisphere 42.4
2289 Male, age 61, right hemisphere 40.4
Globus pallidus, externus
nTPM: 46.3
2395 Male, age 75, both hemispheres 55.0
2772 Female, age 79, unknown 48.4
1996 Male, age 80, right hemisphere 46.8
2646 Male, age 61, right hemisphere 43.1
2567 Female, age 72, unknown 38.2
Globus pallidus, internus
nTPM: 50.8
2287 Male, age 75, right hemisphere 66.8
2778 Female, age 91, both hemispheres 56.2
2111 Female, age 85, right hemisphere 54.1
2483 Female, age 94, right hemisphere 47.1
1818 Male, age 74, unknown 46.6
2566 Female, age 72, unknown 45.0
2037 Male, age 80, right hemisphere 40.0
Nucleus accumbens
nTPM: 48.8
2286 Male, age 75, left hemisphere 53.0
2391 Female, age 94, left hemisphere 51.8
2698 Female, age 72, unknown 51.2
1806 Female, age 85, left hemisphere 51.1
2824 Male, age 61, right hemisphere 49.1
1783 Male, age 74, unknown 49.0
1856 Female, age 91, right hemisphere 46.0
2732 Male, age 80, right hemisphere 39.0
Nucleus basalis of Meynert
nTPM: 43.7
2821 Male, age 75, both hemispheres 48.7
2484 Female, age 94, left hemisphere 44.4
2393 Male, age 80, right hemisphere 42.5
2569 Male, age 61, both hemispheres 39.2
Nucleus of the diagonal band
nTPM: 48.5
1812 Female, age 91, both hemispheres 54.9
2775 Male, age 80, right hemisphere 53.3
2029 Male, age 61, right hemisphere 52.1
2195 Female, age 85, both hemispheres 49.5
1979 Male, age 74, unknown 33.0
Putamen
nTPM: 44.3
2482 Female, age 94, left hemisphere 46.5
2647 Male, age 75, left hemisphere 46.5
1829 Male, age 74, unknown 45.3
2466 Female, age 79, unknown 44.2
1838 Male, age 80, right hemisphere 44.0
1937 Female, age 91, right hemisphere 43.3
2489 Female, age 72, unknown 40.1
Septal nuclei
nTPM: 42.7
2031 Female, age 72, unknown 58.2
1960 Male, age 74, unknown 49.6
2629 Female, age 94, right hemisphere 46.9
2009 Female, age 91, both hemispheres 43.7
2059 Female, age 85, both hemispheres 34.7
2394 Male, age 61, left hemisphere 33.3
2199 Male, age 80, right hemisphere 32.5
Stria terminalis, bed nucleus
nTPM: 43.8
1974 Female, age 91, both hemispheres 53.0
2486 Female, age 94, both hemispheres 47.0
2201 Male, age 74, unknown 31.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 53.1
Min nTPM: 14.9
Std nTPM: 4.7
Median nTPM: 22.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 53.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 50.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 39.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 34.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 34.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 33.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 32.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 32.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 32.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 32.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 31.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.5
Samples: 246

Max nTPM: 46.0
Min nTPM: 14.0
Std nTPM: 4.8
Median nTPM: 25.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 46.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 44.4
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 42.0
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 41.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 38.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 36.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 36.2
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 35.8
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 35.6
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 34.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 34.0
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 23.8
Samples: 205

Max nTPM: 37.5
Min nTPM: 14.6
Std nTPM: 4.2
Median nTPM: 23.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 37.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 37.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 35.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 35.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 35.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 34.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 33.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 32.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 32.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 32.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 31.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 79.6
FF:10164-103B2 76 years, female 79.6
Nucleus accumbens
Scaled Tags Per Million: 83.0
FF:10037-101F1 23-56 years, mixed 83.0
Putamen
Scaled Tags Per Million: 93.0
FF:10176-103C5 60 years, female 93.0
Globus pallidus
Scaled Tags Per Million: 82.6
FF:10175-103C4 60 years, female 88.6
FF:10161-103A8 76 years, female 76.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Caudate
nTPM: 16.2
Samples: 4

Max nTPM: 16.9
Min nTPM: 15.5
Sample A Female 16.8
Sample B Female 15.7
Sample C Male 15.5
Sample D Male 16.9
Putamen
nTPM: 17.2
Samples: 4

Max nTPM: 22.6
Min nTPM: 14.9
Sample A Female 15.6
Sample B Female 15.8
Sample C Male 22.6
Sample D Male 14.9
Septum
nTPM: 18.8
Samples: 4

Max nTPM: 21.4
Min nTPM: 15.2
Sample A Female 19.7
Sample B Female 18.7
Sample C Male 21.4
Sample D Male 15.2
Ventral pallidum
nTPM: 16.7
Samples: 4

Max nTPM: 18.2
Min nTPM: 15.8
Sample A Female 18.2
Sample B Female 15.8
Sample C Male 16.6
Sample D Male 16.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.6
Samples: 4

Max nTPM: 66.3
Min nTPM: 55.2
Sample A Male 60.8
Sample B Male 55.2
Sample C Female 66.3
Sample D Female 56.1
Septum
nTPM: 43.3
Samples: 4

Max nTPM: 44.5
Min nTPM: 42.0
Sample A Male 44.5
Sample B Male 42.7
Sample C Female 44.0
Sample D Female 42.0
Ventral forebrain
nTPM: 49.1
Samples: 4

Max nTPM: 53.3
Min nTPM: 44.7
Sample A Male 53.3
Sample B Male 49.7
Sample C Female 44.7
Sample D Female 48.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.0
70743887 Antisense, RP_050725_01_H11, Mouse strain C57BL/6J (56 days, male) 2.8
67765725 Antisense, RP_040916_01_F10, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 0.8
70743887 Antisense, RP_050725_01_H11, Mouse strain C57BL/6J (56 days, male) 0.8
67765725 Antisense, RP_040916_01_F10, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org