HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:27.7 nTPM
HPA Brain:54.5 nTPM
GTEx:27.7 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:78.2 nTPM
Allen mouse:6.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038308Antibody HPA038696
Glial cells MediumHigh
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.5
Sample id Sample description nTPM
Hippocampus
nTPM: 41.9
1898 Male, age 80, left hemisphere 55.0
1855 Male, age 76, left hemisphere 42.6
1911 Female, age 85, right hemisphere 41.7
2621 Female, age 67, right hemisphere 39.1
2148 Female, age 91, left hemisphere 38.6
2529 Female, age 94, left hemisphere 34.6
Dentate gyrus
nTPM: 42.6
2010 Male, age 76, both hemispheres 53.1
2531 Female, age 67, both hemispheres 42.6
2246 Female, age 85, both hemispheres 42.1
2530 Female, age 94, left hemisphere 40.7
1927 Female, age 91, both hemispheres 40.2
2528 Male, age 74, both hemispheres 36.6
Entorhinal gyrus
nTPM: 38.7
1938 Female, age 85, left hemisphere 44.8
2764 Male, age 80, right hemisphere 43.1
2686 Male, age 75, right hemisphere 38.4
2117 Female, age 91, right hemisphere 36.4
1787 Male, age 76, left hemisphere 35.9
2613 Female, age 94, left hemisphere 33.5
Hippocampus, CA1
nTPM: 43.5
2749 Male, age 80, left hemisphere 50.6
1873 Female, age 85, both hemispheres 49.5
2045 Male, age 76, both hemispheres 42.8
2527 Male, age 74, both hemispheres 37.7
2082 Female, age 91, right hemisphere 36.7
Hippocampus, CA2
nTPM: 41.8
1963 Male, age 80, left hemisphere 48.9
1940 Female, age 85, left hemisphere 48.4
1892 Male, age 76, both hemispheres 44.4
2113 Female, age 91, right hemisphere 38.0
2249 Male, age 74, both hemispheres 37.8
2437 Female, age 94, left hemisphere 33.0
Hippocampus, CA3
nTPM: 39.5
2620 Female, age 94, left hemisphere 46.4
2137 Male, age 80, left hemisphere 43.1
1867 Male, age 76, both hemispheres 40.7
1891 Female, age 85, both hemispheres 40.0
2436 Male, age 74, both hemispheres 37.5
2861 Female, age 67, both hemispheres 29.2
Parahippocampal cortex
nTPM: 44.4
1850 Male, age 80, both hemispheres 60.3
2018 Male, age 76, both hemispheres 51.3
1933 Female, age 85, both hemispheres 50.7
2693 Female, age 94, both hemispheres 50.5
2532 Female, age 72, left hemisphere 46.3
2245 Female, age 91, both hemispheres 40.8
2250 Female, age 67, right hemisphere 39.6
1990 Female, age 91, right hemisphere 38.3
2692 Male, age 74, both hemispheres 33.2
2622 Female, age 67, right hemisphere 32.9
Perirhinal gyrus
nTPM: 54.5
1841 Female, age 85, right hemisphere 67.2
1794 Male, age 80, right hemisphere 57.6
2521 Female, age 94, right hemisphere 53.3
2848 Male, age 76, right hemisphere 49.3
1847 Female, age 91, left hemisphere 45.1
Subiculum
nTPM: 38.5
1977 Female, age 85, both hemispheres 46.7
2042 Male, age 76, both hemispheres 42.1
1901 Male, age 80, both hemispheres 40.1
2729 Female, age 91, right hemisphere 36.8
2438 Female, age 94, left hemisphere 36.1
2619 Male, age 74, both hemispheres 29.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 27.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.7
Samples: 197

Max nTPM: 83.5
Min nTPM: 17.1
Std nTPM: 7.1
Median nTPM: 26.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 83.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 51.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 47.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 45.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 42.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 42.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 38.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 38.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 38.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 38.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 38.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 67.9
FF:10169-103B7 60 years, female 81.0
FF:10153-102I9 76 years, female 54.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.7
Pig sample Sample description nTPM
Subiculum
nTPM: 15.9
Samples: 4

Max nTPM: 18.7
Min nTPM: 14.5
Sample A Female 18.7
Sample B Female 14.5
Sample C Male 14.9
Sample D Male 15.4
Dorsal hippocampus
nTPM: 26.8
Samples: 4

Max nTPM: 32.2
Min nTPM: 20.0
Sample A Female 32.2
Sample B Female 30.1
Sample C Male 20.0
Sample D Male 24.7
Entorhinal cortex
nTPM: 17.4
Samples: 4

Max nTPM: 19.6
Min nTPM: 16.2
Sample A Female 16.5
Sample B Female 19.6
Sample C Male 17.1
Sample D Male 16.2
Ventral hippocampus
nTPM: 21.9
Samples: 4

Max nTPM: 27.8
Min nTPM: 16.0
Sample A Female 25.3
Sample B Female 18.6
Sample C Male 16.0
Sample D Male 27.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 78.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 69.9
Samples: 4

Max nTPM: 76.4
Min nTPM: 60.1
Sample A Male 70.3
Sample B Male 76.4
Sample C Female 72.7
Sample D Female 60.1
Hippocampal formation
nTPM: 78.2
Samples: 4

Max nTPM: 86.7
Min nTPM: 73.6
Sample A Male 86.7
Sample B Male 75.8
Sample C Female 76.7
Sample D Female 73.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.3
70743887 Antisense, RP_050725_01_H11, Mouse strain C57BL/6J (56 days, male) 7.2
67765725 Antisense, RP_040916_01_F10, Mouse strain C57BL/6J (56 days, male) 5.5

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