MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:326.7 nTPM
HPA Brain:363.9 nTPM
GTEx:326.7 nTPM
FANTOM5:724.3 Scaled Tags Per Million
Pig:356.0 nTPM
Mouse:739.0 nTPM
Allen mouse:24.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 363.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 305.1
2411 Female, age 72, unknown 367.8
1827 Male, age 72, unknown 354.6
1870 Female, age 42, unknown 354.2
2019 Male, age 18, unknown 306.7
2666 Male, age 74, left hemisphere 293.1
1833 Male, age 53, unknown 292.9
2828 Female, age 72, unknown 291.2
1830 Male, age 51, unknown 282.2
2586 Male, age 75, left hemisphere 257.9
2219 Male, age 76, both hemispheres 250.4
Dorsal raphe nucleus
nTPM: 318.0
2298 Female, age 72, unknown 371.5
2750 Male, age 76, both hemispheres 327.0
2047 Male, age 72, unknown 305.3
1828 Male, age 53, unknown 302.4
2016 Female, age 72, unknown 283.9
Inferior colliculus
nTPM: 306.0
2097 Female, age 72, unknown 364.7
1848 Female, age 42, unknown 307.1
1890 Male, age 53, unknown 282.1
2849 Male, age 72, unknown 269.9
Median raphe nucleus
nTPM: 333.5
2220 Male, age 76, midline 333.5
Periaquaductal grey, anterior
nTPM: 340.8
1947 Male, age 18, unknown 373.8
2502 Female, age 75, unknown 351.0
1795 Male, age 51, unknown 297.7
Periaquaductal grey, dorsal
nTPM: 284.2
1840 Male, age 53, unknown 296.5
2464 Female, age 72, unknown 289.4
1831 Male, age 72, unknown 288.9
2850 Male, age 76, both hemispheres 262.2
Periaquaductal grey, lateral
nTPM: 265.7
2053 Male, age 18, unknown 299.9
2272 Male, age 74, both hemispheres 261.8
2140 Male, age 76, both hemispheres 235.3
Pretectal area
nTPM: 336.3
1816 Male, age 51, unknown 403.3
2007 Male, age 72, unknown 384.8
1815 Male, age 53, unknown 364.9
1944 Female, age 72, unknown 362.7
1817 Female, age 42, unknown 360.7
2224 Female, age 72, unknown 332.0
2667 Female, age 75, unknown 325.7
2273 Male, age 74, both hemispheres 316.2
2825 Male, age 18, unknown 298.7
2407 Male, age 75, both hemispheres 289.5
2316 Male, age 76, right hemisphere 261.3
Red nucleus
nTPM: 309.7
1821 Female, age 72, unknown 407.6
2503 Female, age 72, unknown 338.2
1954 Female, age 42, unknown 321.6
1865 Male, age 51, unknown 317.2
1904 Male, age 53, unknown 312.1
2725 Female, age 75, unknown 298.7
2785 Male, age 18, unknown 292.7
2227 Male, age 72, unknown 291.0
2769 Male, age 72, unknown 290.1
2588 Male, age 74, left hemisphere 283.1
2584 Male, age 75, left hemisphere 282.8
2823 Male, age 76, right hemisphere 280.9
Substantia nigra
nTPM: 363.9
2241 Male, age 72, unknown 419.2
1941 Male, age 53, unknown 412.2
1889 Female, age 72, unknown 390.9
1916 Female, age 42, unknown 387.1
1851 Male, age 51, unknown 383.7
2409 Female, age 72, unknown 379.5
2665 Male, age 74, both hemispheres 341.1
2590 Female, age 75, unknown 323.2
2583 Male, age 75, right hemisphere 308.0
2699 Male, age 18, unknown 294.3
Superior colliculus
nTPM: 313.8
2668 Female, age 75, unknown 356.4
2261 Male, age 18, unknown 355.8
2587 Male, age 74, left hemisphere 346.3
2087 Female, age 72, unknown 344.4
1796 Male, age 53, unknown 312.0
1913 Female, age 42, unknown 305.5
1839 Male, age 51, unknown 293.9
1895 Male, age 76, right hemisphere 288.7
2664 Male, age 75, both hemispheres 278.5
1995 Male, age 72, unknown 256.8
Ventral tegmental area
nTPM: 340.8
2410 Female, age 72, unknown 382.7
2223 Female, age 72, unknown 360.8
1915 Female, age 42, unknown 343.6
1942 Male, age 51, unknown 333.8
2218 Male, age 76, both hemispheres 323.6
2021 Male, age 53, unknown 300.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 326.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 326.7
Samples: 139

Max nTPM: 653.4
Min nTPM: 173.7
Std nTPM: 87.0
Median nTPM: 304.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 653.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 651.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 601.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 567.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 496.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 494.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 480.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 473.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 457.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 455.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 446.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 724.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 724.3
FF:10158-103A5 76 years, female 724.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 356.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 340.4
Samples: 4

Max nTPM: 449.4
Min nTPM: 252.1
Sample A Female 449.4
Sample B Female 317.5
Sample C Male 342.4
Sample D Male 252.1
Midbrain
nTPM: 356.0
Samples: 4

Max nTPM: 414.8
Min nTPM: 284.0
Sample A Female 414.8
Sample B Female 363.7
Sample C Male 361.3
Sample D Male 284.0
Periaqueductal gray
nTPM: 264.6
Samples: 3

Max nTPM: 278.8
Min nTPM: 239.0
Sample B Female 278.8
Sample C Male 275.9
Sample D Male 239.0
Superior colliculi
nTPM: 338.5
Samples: 4

Max nTPM: 392.4
Min nTPM: 296.9
Sample A Female 362.4
Sample B Female 302.1
Sample C Male 392.4
Sample D Male 296.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 739.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 739.0
Samples: 4

Max nTPM: 775.6
Min nTPM: 695.5
Sample A Male 695.5
Sample B Male 752.6
Sample C Female 775.6
Sample D Female 732.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.4
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 26.2
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 22.6
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 21.9
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 20.9

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